DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pps and ash1

DIOPT Version :9

Sequence 1:NP_001247075.1 Gene:pps / 41524 FlyBaseID:FBgn0082831 Length:2018 Species:Drosophila melanogaster
Sequence 2:NP_001246834.1 Gene:ash1 / 40133 FlyBaseID:FBgn0005386 Length:2226 Species:Drosophila melanogaster


Alignment Length:1640 Identity:309/1640 - (18%)
Similarity:524/1640 - (31%) Gaps:504/1640 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   438 QMPATKSVPAV--FALGRGLPSTSFLK-----IRPTHQSLPVKRPPLPTTPANSNVRRMPAVQLG 495
            |...:||:.:.  |::.|.  .|..|:     ||||...:..|:||.....:..:.....:....
  Fly    35 QSSQSKSIKSATQFSVQRS--DTDGLRMRISAIRPTLGVVATKKPPKSRKMSTQDTESGCSEAKN 97

  Fly   496 RIVNSPQEVKEIIINKNMASPKGVFTNLNTLLGEDNNAATKSSPVPLRHRAVMSPSTPRS----- 555
            |.|:...:||    .|.:||..|:               :||..|....::.:|..:..|     
  Fly    98 RAVSKKVKVK----RKKLASSSGI---------------SKSDKVSKSKKSQISAFSSDSEDDLP 143

  Fly   556 -SYNQQMSPIVV--PVPAQAHTPSKGFMPIGVDTAQSHKLP--AQIVIETHQSSSE--------L 607
             ..:||.:|.|:  .:...|.:.||..:.||: ::..::||  .|..|:..:|.:|        .
  Fly   144 LKVHQQRAPRVLLSAIIQAAQSASKPTLDIGI-SSSDNELPNLVQAAIKRVESDTEDTTVEGSFR 207

  Fly   608 AAENDKQLDLINSIVQDELLKSTLVEQPVVNADEDIPKLVKMLESTAADL-------DPPPVSLP 665
            .|..||.|....|.:..:.::.|.:....|||.....|:.|..|.|....       ..|...:|
  Fly   208 KAAKDKNLPQYQSTLLQDFMEKTQMLGQTVNAKLAEEKVAKAKEETLVQTAVPRKRRGRPKKVVP 272

  Fly   666 TNIFPAPEMQGVGNAAAADPNNIMDTANEDEITADFLQHVVGLIEEDKQFEAEVVKQVLASTEPG 730
            |  .|||...|.....:||...|..|:...                              ||.|.
  Fly   273 T--VPAPGNSGPAINESADSGVISTTSTTQ------------------------------STTPS 305

  Fly   731 TLDAIVSMPTSIEPVDVPQVQAHTNLLPNASLTEPAQSMTSLPIACSTPSRSVAASTPPTSAKVV 795
                             |::| :.|.:|..          |||||.|:..:...|...    |.:
  Fly   306 -----------------PKMQ-NENAVPTG----------SLPIASSSKPKIDMAYLD----KRM 338

  Fly   796 RGYGRVIYLPPIEAPTTRAKRRAQFPSAPGMAATSSSDAGNLSFGESSLDASINQPLNTSSLSND 860
            ....||:|.||      |:|||.....    .|.|||:...|.......:..:|:.....|:|..
  Fly   339 YATERVLYPPP------RSKRRQNNKK----TACSSSNKEELQLDPLWREIDVNKKFRLRSMSVG 393

  Fly   861 SQPGSGPKRPNPREPSMARRSTAPRRSKKLDASQNNDPDASESQEDDDDPNKLWCICRQPHNNRF 925
            :..|:|              ::....||.|.|......|....:..           |..||:..
  Fly   394 AASGTG--------------ASTTICSKVLAAKSGYVSDYGSVRHQ-----------RSSHNHNS 433

  Fly   926 MICCDL-CEDWFHGTCVGVTKA-MGTDMENKGIDWK--CPKCVKRQEERSQPRITDMLV--TRPT 984
            ....|. |:..:.      ||: |......|...::  |.:..|......:.|...||:  :...
  Fly   434 GYKSDASCKSRYS------TKSCMSRRSRAKSCGYRSDCKESGKSGLRMRRKRRASMLLKSSADD 492

  Fly   985 TQPEQRPSETKVLTTTAEIVQVAAPSAPRRTLPVVLTVASSPMRIPMAKPA-KKFPTGAISHQQQ 1048
            |..:|            :|:|:|..|         |..:|......::||: |..||.:.|.:..
  Fly   493 TVEDQ------------DILQLAGLS---------LGQSSEESNEYISKPSLKSLPTTSASKKYG 536

  Fly  1049 QQLNFIRLG-----------PSPGKRISETLCVVCKRPASTSSVYCGEECIRKYAQSAIQAHAAT 1102
            :...::..|           .:|...||:.:....:.||.:.| .|..:..|..|.|...::.:.
  Fly   537 EINRYVTTGQYFGRGGSLSATNPDNFISKMMNQRKETPAPSKS-SCKIKSRRSSAASMCSSYVSG 600

  Fly  1103 KGPLPQNAGAQSLLNN---SFDAK-------------------------KNKKKDLFEDVLR--- 1136
            ...:.:....:|..:|   :.|:|                         .:.|:.|..|..:   
  Fly   601 VSRMRRRHRRKSFSHNKSLNIDSKLLTEIEIITSTFNSRCRIQDDRLTGSSGKEKLLADANKLQA 665

  Fly  1137 -----------------QADTVSKVERINVFERKSGRVITGHMAPSAHQFRKWLQENPSFEVLPS 1184
                             .|.|:||..:..:.:||....:......||           |....|:
  Fly   666 TLAAPSPAQQLTLNGGGPASTLSKPLKRGLKKRKLSEPLVDFAMLSA-----------SASGTPN 719

  Fly  1185 GTVQSADAEKRLLKGAPEAATSTSEPAVLGVAK---------KPPEGPAKLSHPQNTTVQASHQL 1240
            |:..|....||..|.:....:|:.:...|.:.|         :||...|..:...|....|:...
  Fly   720 GSGSSNGNTKRRHKKSQSNDSSSPDDHKLPLKKRHYLLTPGERPPAEVAFANGKLNAEAWAAAAA 784

  Fly  1241 GISSVRPL-------AKKDKEKTTP----TVQAPTP-------------------NRIAAGKPEP 1275
            ...|....       |:..|...||    .::.||.                   |.|:.||...
  Fly   785 AAKSTASTKSQAQFNARSVKSALTPKKRHLLEQPTSVSGAGSSASNSPLRIVVDNNSISGGKLLD 849

  Fly  1276 VRIGIRRSLREQLL--ARIKEAQAAEE--NSGQPTTQWPTVLEVDQFVKNVELEM---FNSFGRD 1333
            :......||::|..  |..::..||::  ....|...:|   ....|..:||||:   .:.....
  Fly   850 ISPSSLCSLKQQRRGGAAKQKVSAAKDLVQLQSPAGSYP---PPGVFEPSVELEIQIPLSKLNES 911

  Fly  1334 VGAKYKAKYRSLMFNIKDRKNRTLFEKICAKQVEPRQLVRMTPEQLASQELAKWREEENRHQLDM 1398
            |..  ||:..|.:.:..|.|..|      .|:|..|.:..:..:...:..|.:.|::.||.....
  Fly   912 VIT--KAEVESPLLSALDIKEDT------KKEVGQRVVETLLHKTGGNLLLKRKRKKINRTGFPT 968

  Fly  1399 IKKSELDLLACAQNYVVKTHKGEEVIATKVDVTLPEENVSE--ASSMADTKQTSLVSEPSTSTLE 1461
            :::.:..:..            |:.....:|...||.:..:  ..|:.:|:.::.|:..:.....
  Fly   969 VRRKKRKVSV------------EQQTTAVIDEHEPEFDPDDEPLQSLRETRSSNNVNVQAAPNPP 1021

  Fly  1462 RSTSR-EKAGSSKE-----KRHKSHK-------HHHRKRSRSRSNSRGRSVDKRHRRQHNEGGEQ 1513
            ....| .:||.::|     ...|:.:       ...|.::.:|...|||.  .::|.|.....:.
  Fly  1022 LDCERVPQAGEARETFVARTNQKAPRLSVVALERLQRPQTPARGRPRGRK--PKNREQAEAAPQP 1084

  Fly  1514 PGSGEREHRSREKQSRE-----RDEIVPSPLP-----------------------------KKRD 1544
            |...|.|.|..:|:.|:     .:|..|:|.|                             |:|.
  Fly  1085 PPKSEPEIRPAKKRGRQPKQPVLEEPPPTPPPQQKKNKMEPNIRLPDGIDPNTNFSCKIRLKRRK 1149

  Fly  1545 ENDQSPVPKKTAEKKTE-ASAYNLVDQILESEKTVE---QAANLGKPKPSPKPLPTLPSSLKAPE 1605
            ..:....|||  ||..: .:...:..:|..|::.::   :|..|........|||.  |....|.
  Fly  1150 NLEAGTQPKK--EKPVQPVTVEEIPPEIPVSQEEIDAEAEAKRLDSIPTEHDPLPA--SESHNPG 1210

  Fly  1606 PMDNYSRYLHGLTTSSLWSGTLKMIDLADFEIVMYPVQG--NCHQLGNLMPSQMDVIGRITRVNV 1668
            |.|    |.....:|...:.|..:..|:..: ..|.|.|  :.|...:|||..            
  Fly  1211 PQD----YASCSESSEDKASTTSLRKLSKVK-KTYLVAGLFSNHYKQSLMPPP------------ 1258

  Fly  1669 WEYIKKLKKSP--TKEVVIVNIFPASP-SETY----------KFDLFFEYLDSRQRLGVLGVDSD 1720
                .|:.|.|  .::|...::.|..| .|.|          .:|:::.|.:|            
  Fly  1259 ----AKVNKKPGLEEQVGPASLLPPPPYCEKYLRRTEMDFELPYDIWWAYTNS------------ 1307

  Fly  1721 QIRDFYIFPLGSGDKLPPALQTAEPVP----------FYEEAQRPNTLLGI-------------- 1761
                          |||    |...||          .|.|:.||| |.|.              
  Fly  1308 --------------KLP----TRNVVPSWNYRKIRTNVYAESVRPN-LAGFDHPTCNCKNQGEKS 1353

  Fly  1762 -IVRCLSKRPADAVPSTPSVPTPVPALSSKVAKRSRSSISYPAQSSPKRKISTHSTSSKDDEF-- 1823
             :..||::     :..|...|:..||                .:....:||..|:.:...:.|  
  Fly  1354 CLDNCLNR-----MVYTECSPSNCPA----------------GEKCRNQKIQRHAVAPGVERFMT 1397

  Fly  1824 ---DIDAIIKAPIAK 1835
               ......|.||||
  Fly  1398 ADKGWGVRTKLPIAK 1412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ppsNP_001247075.1 TNG2 <827..965 CDD:227367 25/141 (18%)
PHD_PHF3_like 914..963 CDD:277027 10/52 (19%)
BRK 1142..1186 CDD:197800 8/43 (19%)
TFIIS_M 1274..1396 CDD:284835 27/128 (21%)
SPOC 1623..1729 CDD:285043 20/120 (17%)
ash1NP_001246834.1 AWS 1340..1388 CDD:197795 9/68 (13%)
SET 1392..1512 CDD:214614 6/21 (29%)
Bromo_ASH1 1680..1787 CDD:99955
PHD_ASH1L 1858..1900 CDD:277023
BAH_polybromo 1929..2073 CDD:240068
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
11.030

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