DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pps and Dido1

DIOPT Version :9

Sequence 1:NP_001247075.1 Gene:pps / 41524 FlyBaseID:FBgn0082831 Length:2018 Species:Drosophila melanogaster
Sequence 2:XP_006235867.1 Gene:Dido1 / 362286 RGDID:1311173 Length:2258 Species:Rattus norvegicus


Alignment Length:1786 Identity:381/1786 - (21%)
Similarity:612/1786 - (34%) Gaps:610/1786 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   639 ADEDIPKLVKMLESTAADLDPPPVSLP---------TNIFPAPEMQGVGNAAAADPNNIMDTANE 694
            ::|:.||.:|            |.|..         |.|   .:.:|.|: ...||:.....   
  Rat     8 SNEEAPKAIK------------PTSKEFRKTWGFRRTTI---AKREGAGD-TEVDPSEQQPQ--- 53

  Fly   695 DEITADFLQHVVGLIEEDKQ-FEAEVVKQVLAST-EPGTLDAIVSMPTSIEPVD--VPQVQAHTN 755
                    ||.:.|....:| ...|.|::.|.:. ..|..:..||:..|.||..  |..|:    
  Rat    54 --------QHNLSLRRSGRQPKRTERVEEFLTTVRRRGRKNVPVSLEDSSEPTSSTVTDVE---- 106

  Fly   756 LLPNASLTEPAQSMTSLPIACSTPSRSVAASTPPTSAKVVRG----------------------- 797
                   |....|:.|.....|.|:........|:|::.|:|                       
  Rat   107 -------TASEGSVESSSEIRSGPAPGTLGKEHPSSSEKVKGGDEEEDTSDSDSDGLTLKELQNR 164

  Fly   798 YGRVIYLPPIEAP------TTRAKRRAQFPSAPGMAATSSSDAGNLSFGESSLDASINQPLNTSS 856
            ..|.....|:|..      ..|.:||.:.|          ::||::..|      ||.:  :|..
  Rat   165 LRRKREQEPVERSLRGIQNRLRKQRREEDP----------AEAGSVQIG------SIEE--DTPR 211

  Fly   857 LSNDSQPGSGP---KRPNPREPSMARRSTAPRRSKKLDASQNNDP-DASESQEDDD--DPNKLWC 915
            ...:.:...||   ...:.||..:..::|        ..|:...| :|.:.:.:.:  |||.|:|
  Rat   212 CKQEPEASQGPVSQSEKDDRENQLEGKAT--------QGSKEESPREAGKPKPECEVYDPNALYC 268

  Fly   916 ICRQPHNNRFMICCDLCEDWFHGTCVGVTKAMGTDMENKGIDWKCPKC--VKRQEERSQPRITDM 978
            |||||||||||||||.||:||||.|||:::|.|..:|..|.|:.||.|  ::.|:|.|.....:.
  Rat   269 ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILQVQDETSSSAADEQ 333

  Fly   979 -LVTRPTTQP----------EQRPSETKVLTTTAEIVQVAAPSAPRRTLPVVLTVASSPMRIPMA 1032
             ...||....          |||..|.:.:  ...|.:.|.||. ::.|.:...|..:|      
  Rat   334 DAGCRPVGADGTDCTSIGTVEQRSGEDQGI--KGRIEKAANPSG-KKKLKIFQPVVEAP------ 389

  Fly  1033 KPAKKFPTGAISHQQQQQLNFIRLGPSPGKRISETLCVVCKRPASTSSVYCGEECIRKYAQSAIQ 1097
                    ||..          .:||.            |...|...||||..:||.|:|.:.::
  Rat   390 --------GAAK----------CIGPG------------CSNVAQPDSVYCSNDCILKHAAATMK 424

  Fly  1098 AHAATKGPLPQNAGAQSLLNNSFDAKK-----NKKKDLFEDVLRQADTVSKVERINVFERK--SG 1155
            ..::.|...|:......:....|...|     ..|.......|......:.|:::.:..|.  |.
  Rat   425 ILSSGKEQKPKPKEKVKMKPEKFSLPKCSVQAGIKISSVHKRLASEKRENPVKKVTLASRSETSV 489

  Fly  1156 RVITGHMAP---SAHQFRKWLQENPSFEVLPSG-------------------TVQSADAEKRLLK 1198
            :..|....|   |.|.:.....|.|.....|:.                   ||.:|...|:.:.
  Rat   490 KEATCESTPSWASDHNYNAVKPEKPEKPEKPTALSPTLLSKSMKDDKRVEDRTVAAAAVPKKAVP 554

  Fly  1199 GAPEAATSTSE-----------PAVLG---VAKKPPEG------------------PAKLSHPQN 1231
            ........||.           |.:.|   ..||.|.|                  .|:.:.| .
  Rat   555 PGSVMGRQTSPRNLVPKKLPPYPNMAGAKTAVKKLPSGFKGTIPKRPWPSATLSGTSARQAGP-T 618

  Fly  1232 TTVQASHQL-GISSVRPLAKKDKEKTTPTVQAPTPNRIAAGKPEP------VRIGIRRSLREQLL 1289
            ..:.||.:| |.::|..:|:|......|.. :|.|.|:....|.|      :|..|||||:|.|.
  Rat   619 PVIAASKKLPGSAAVVGIARKPMSANVPAA-SPVPGRLGPVSPAPSQPNSQIRQNIRRSLKEILW 682

  Fly  1290 ARIKEAQ--AAEENSGQPTTQWPTVLEVDQFVKNVELEMFNSFGRDVGAKYKAKYRSLMFNIKDR 1352
            .|:.::.  ...||            ||.:...::|.||||.| :....:||:||||:|||:||.
  Rat   683 KRVNDSDDLIMTEN------------EVGKIALHIEKEMFNLF-QVTDNRYKSKYRSIMFNLKDP 734

  Fly  1353 KNRTLFEKICAKQVEPRQLVRMTPEQLASQELAKWREEENRHQLDMIKKSELDLLACAQNYVVKT 1417
            ||:.||.::..:::...:||||.||:|.|:||:.|.|:..:..::    |...||.         
  Rat   735 KNQGLFHRVLREEISLAKLVRMKPEELVSKELSMWTEKPTKSVIE----SRTKLLN--------- 786

  Fly  1418 HKGEEVIATKVDVTLPE--ENVSEASSMADT-KQTSLVSEPSTST---LERSTSREKAGSSKEKR 1476
                   .:|.:.|.||  .::.::..::|: :|.|:.:.|..||   |:..:|..|..:|:.:.
  Rat   787 -------ESKKNSTKPETIPDMEDSPPVSDSEEQESVRAAPEKSTAPLLDVFSSMLKDTTSQHRA 844

  Fly  1477 H--------------KSHKHHHRKRSRSRSNSRGRSVDKRHRRQHNEGGEQPGSGEREHRSREKQ 1527
            |              .|......|:.:..::|:...:..||                        
  Rat   845 HLFDLNCKICTGQVPSSEDEPAPKKQKLSASSKKEDLKARH------------------------ 885

  Fly  1528 SRERDEIVPSPLPKKRDENDQSPVPKKTAEKKTEASAYNLVDQILESEKTVEQAANLGKPKPS-- 1590
                |...|..:|...||. .:..|:.|.:...|.     |..:.:..|...::|....|:||  
  Rat   886 ----DSSPPDAVPSTADEG-IAETPENTCDPDLET-----VSSLNQERKGFPESAGDSHPEPSSL 940

  Fly  1591 ----------------------------------------------------------------- 1590
                                                                             
  Rat   941 DGLSSSFASGGSGVVTTVTVSGRDPRTALSGSCTVTASMAAHMDNSQTSETKLEILKPALTSAVV 1005

  Fly  1591 PKPLPTLPSSLKAPEPMDNYSRYL-----------------HGLTT------SSLWSGTLKMIDL 1632
            ||.:...|||  :|:|     |||                 .|.||      |::|.|.:.|..:
  Rat  1006 PKSILAKPSS--SPDP-----RYLSVPPSPNTSISESRSPPEGDTTLFLSRLSTIWKGFINMQSV 1063

  Fly  1633 ADFEIVMYPVQGNCHQLGNLMPSQMDVIGRITRVNVWEYIKKLKKSPTKEVVIVNIFPASPSETY 1697
            |.|....|||.|....|...:|..:.:.|||....||:|:.|||.|.:||:.::...||:..|..
  Rat  1064 AKFVTKAYPVSGCLDYLSEDLPDTIHIGGRIAPKTVWDYVGKLKSSVSKELCLIRFHPATEEEEV 1128

  Fly  1698 KFDLFFEYLDSRQRLGVLGVDSDQIRDFYIFPLGSGDKLPPALQTAEPVPFYE---EAQRPNTLL 1759
            .:...:.|..||.|.||:..::..::|.|:.||.:.|.:|..|     :||..   |:.|||.:|
  Rat  1129 AYISLYSYFSSRGRFGVVANNNRHVKDLYLIPLSAKDPVPSKL-----LPFEGPGLESPRPNIIL 1188

  Fly  1760 GIIVRCLSKRPADA--------------------------------------------------- 1773
            |:::....|||:.|                                                   
  Rat  1189 GLVICQKVKRPSSAGELDKTDEKRPRLQQEETETSVYPKVTAALPSEKKPPKYSVHSADTTASST 1253

  Fly  1774 -VPSTPSVPTPVP-----ALSSKVAKRSRSSISYPAQSS-------------------------- 1806
             .|.:|..|.|:|     .:.|.:...|.|:::.|..|:                          
  Rat  1254 TPPGSPPPPPPLPEPPVLKILSSLKPGSTSTVTAPTTSAVITTTASPVTAATSKTASPLEHILQT 1318

  Fly  1807 ---------PKRKIST-------HSTSSKDDEFDIDAIIKAPIAKL--QKTAPKVVPQPSV---P 1850
                     |..|.|.       |.:.:|.::....|.:..||.:.  |.:..|.:.:...   |
  Rat  1319 LFGKKKSFEPSGKESVGSTLAPHHDSKAKGEDTMSAAPLLDPIVQQFGQFSKDKALEEEEEDDRP 1383

  Fly  1851 NDADEPYSPGGSDDEL---------VPSAP----------------------------------- 1871
            .|.:|.|:|..:...|         |||.|                                   
  Rat  1384 YDPEEEYNPDRAFHTLLAEPGRPHDVPSVPETAEREEVAYDPEDETILEEAKVTIDDLPNRMCVK 1448

  Fly  1872 ----QRPNDL------------ERQVNEINKQIAAQQMEIAGLLKVEPTGSASSSNVLAAISIP- 1919
                :||.|.            ::.:.|:||||..|:.::.     |...:.........:|:. 
  Rat  1449 VSSTERPADFSTDASSASLVEQQKMLEELNKQIEEQKRQLE-----EQEEALRQQRAAVGVSMAH 1508

  Fly  1920 ANLSKILASIKDKTNLPSSADDGDEE--YNPEDDITATS----SFASKKPRSKGRL-AHLSEAEL 1977
            .::|..|.|...|::|..:.....|:  .:|.....:|:    |..|:.||...|| |..:|.|.
  Rat  1509 FSVSDALMSPPPKSSLGKTELFSQEQQALDPSQGSLSTNHSLDSRQSRDPRQARRLAAENTENES 1573

  Fly  1978 LSMVPDNLA----GVIP-RSSRTRHQLAQSP 2003
            |...|....    |.:| |.:.....:||.|
  Rat  1574 LPRAPTGSTSGPQGTLPARETPAGAAVAQGP 1604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ppsNP_001247075.1 TNG2 <827..965 CDD:227367 51/145 (35%)
PHD_PHF3_like 914..963 CDD:277027 32/48 (67%)
BRK 1142..1186 CDD:197800 10/67 (15%)
TFIIS_M 1274..1396 CDD:284835 47/129 (36%)
SPOC 1623..1729 CDD:285043 34/105 (32%)
Dido1XP_006235867.1 TNG2 <157..299 CDD:227367 50/167 (30%)
PHD_DIDO1_like 263..316 CDD:277109 35/52 (67%)
TFS2M 671..772 CDD:128786 44/113 (39%)
SPOC 1046..1194 CDD:400205 48/152 (32%)
SWIRM-assoc_1 <1465..1502 CDD:406808 7/41 (17%)
PHA03247 <1564..2085 CDD:223021 12/41 (29%)
SF-CC1 2144..>2182 CDD:273721
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 108 1.000 Domainoid score I6312
eggNOG 1 0.900 - - E1_KOG1634
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007937
OrthoInspector 1 1.000 - - otm45948
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11477
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
76.960

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