DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pps and set2

DIOPT Version :9

Sequence 1:NP_001247075.1 Gene:pps / 41524 FlyBaseID:FBgn0082831 Length:2018 Species:Drosophila melanogaster
Sequence 2:NP_594980.1 Gene:set2 / 2542070 PomBaseID:SPAC29B12.02c Length:798 Species:Schizosaccharomyces pombe


Alignment Length:983 Identity:177/983 - (18%)
Similarity:296/983 - (30%) Gaps:351/983 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   822 SAPGMAAT----SSSDAGNLSFGESSLDASINQPLNTSSLSNDSQPGSGPKRPNPREPSMARRST 882
            |:|..:::    |..||..::..||:...|.:.|.:.||.|....              :.:.:.
pombe    36 SSPSSSSSHDFESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKY--------------VRKEAL 86

  Fly   883 APRRSKKLDASQNNDPDASESQEDDDDPNKLWCICR-------QPHNNRFMICCDLCEDWFHGTC 940
            .|:....||::::......|..::          |:       :|..|..|| ||....|..|  
pombe    87 PPQLFHHLDSAKDKALTTFEEIQE----------CQYASANIGKPPENEAMI-CDCRPHWVDG-- 138

  Fly   941 VGVTKAMGTDMENKGIDWKC--------PKCVKRQEERSQPRITDMLVTRPTTQPEQR------- 990
            |.|....|::..|:....:|        |.|..::.:|.:....|:.:|      |::       
pombe   139 VNVACGHGSNCINRMTSIECTDEDNVCGPSCQNQRFQRHEFAKVDVFLT------EKKGFGLRAD 197

  Fly   991 ---PSETKVLTTTAEIVQVAAPSAPRRTLPVVLTVASSPMRIPMAKPAKKFPTGAISH------Q 1046
               |.:|.|.....|::    |....|                  |..:::.:..|.|      |
pombe   198 ANLPKDTFVYEYIGEVI----PEQKFR------------------KRMRQYDSEGIKHFYFMMLQ 240

  Fly  1047 QQQQLNFIRLGP---------SPGKRISETLC-------VVCKRP-----------------AST 1078
            :.:.::..:.|.         .|...:.:.:.       :.|||.                 |..
pombe   241 KGEYIDATKRGSLARFCNHSCRPNCYVDKWMVGDKLRMGIFCKRDIIRGEELTFDYNVDRYGAQA 305

  Fly  1079 SSVYCGEECIRKYAQSAIQAHAATKGPLPQNAGAQSLLNNSFDAKKN-------KKKDLFEDVLR 1136
            ...||||.|...|.....|..|.:|  ||:|......:.:..|:.:|       :||.:      
pombe   306 QPCYCGEPCCVGYIGGKTQTEAQSK--LPENVREALGIEDEEDSWENITARRQRRKKGI------ 362

  Fly  1137 QADTVSKVERINVFERKSGRVITGHMAPSAHQFRKWLQENPSFEVLPSGTVQSADAEKRLLKGAP 1201
              |..||:                            ::|           ||            |
pombe   363 --DETSKI----------------------------IEE-----------VQ------------P 374

  Fly  1202 EAATSTSEPAVLGVAKKPPEGPAKLSHPQNTTVQASHQLGISSVRPLAKKDKEKTTPTVQAPTPN 1266
            ...||.|...|:||.                               |..||...|          
pombe   375 TPLTSESATKVIGVL-------------------------------LQTKDDLLT---------- 398

  Fly  1267 RIAAGKPEPVRIGIRRSLREQLLARIKEAQAAEENSGQPTTQWPTVLEVDQFVKNVELEMFNSFG 1331
                           |.|.|::.                .|..|:|..     ..:.|..:|.||
pombe   399 ---------------RKLMERIF----------------LTSDPSVCR-----SIIALRGYNIFG 427

  Fly  1332 RDVGAKYKAKYRSLMFNIKDRKN--RTLFEKICAKQVEPRQLVRMTPEQLASQELAKWREEENRH 1394
            ..: .|:......::.:||...:  |....||....:||      ..::....|    .||...|
pombe   428 LML-KKFSIDIEFILRSIKTMLSWPRLTRNKIQDSNIEP------VVQEFCDHE----NEEVKDH 481

  Fly  1395 QLDMIKKSELDLLACAQNYVVKTHKGEEVIATKVDVTLPEENVSEASSMADTKQTSLVSEPSTST 1459
            ...::|:.|...:|    |.:...|..:|.....:.. |..|.|. ..:.|       .||... 
pombe   482 AKTLLKEWESLEIA----YRIPRRKPGQVAPQSTNAE-PSNNQSN-PPLRD-------QEPQRG- 532

  Fly  1460 LERSTSREKAGSSKEKRHKSHKHHHRKRSRSRSNSRGRSV---DKRHRRQHNEGGEQPGSGEREH 1521
             ::...:....:|.|...|.|...|..|.   |:||.||.   |.:...:||         ....
pombe   533 -DKGDIKSAINNSTEDLSKKHPALHSSRP---SDSRSRSKFGNDYQSHSKHN---------LFRK 584

  Fly  1522 RSREKQSRERDEIVPSPLPKKRDENDQ-SPVPKKTAEKKTEASAYNLVDQ--ILESEKTVEQAAN 1583
            .|..|:.|..:...||......:|.:| |....|....|..::|...|:|  :|:::|  |:...
pombe   585 NSFPKRRRLSNSDTPSETTTPNNEQEQVSNQANKVDLNKIISAAMESVNQKNVLKAQK--EEEER 647

  Fly  1584 LGKPKPSPKPLPTLPSSLKAPEPMDNYSRYLHGLTTSSLWSGTLKMIDLADFEIVMYPVQGNCHQ 1648
            :.:.|...|.......|||      .:::.||...|.|....|:.                  |.
pombe   648 IAQQKREEKRRLAYEESLK------RHAKKLHEKKTKSSQDATID------------------HH 688

  Fly  1649 LGNLMPSQM---DVIGRITRVNVWEYIKKLKKSPTK-------EVVIVNIFPASPSETYKFDLFF 1703
            |.:..|..:   .|:.:........|.:||.|:..|       |:::........|:..| .|..
pombe   689 LTSHSPESIAFKAVLAKFFANKTARYQEKLGKAEFKLRVKKMTEIILKKHIQLVLSKKEK-ALPD 752

  Fly  1704 EYLDSRQR 1711
            |..||:||
pombe   753 ELSDSQQR 760

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ppsNP_001247075.1 TNG2 <827..965 CDD:227367 30/156 (19%)
PHD_PHF3_like 914..963 CDD:277027 15/63 (24%)
BRK 1142..1186 CDD:197800 3/43 (7%)
TFIIS_M 1274..1396 CDD:284835 22/123 (18%)
SPOC 1623..1729 CDD:285043 19/99 (19%)
set2NP_594980.1 AWS 125..179 CDD:197795 14/56 (25%)
SET 180..303 CDD:214614 18/150 (12%)
SET 275..791 CDD:225491 129/689 (19%)
PostSET 304..320 CDD:214703 6/15 (40%)
Med26 440..489 CDD:285873 12/58 (21%)
SRI 699..771 CDD:285448 15/63 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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