DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pps and Phf3

DIOPT Version :9

Sequence 1:NP_001247075.1 Gene:pps / 41524 FlyBaseID:FBgn0082831 Length:2018 Species:Drosophila melanogaster
Sequence 2:NP_001074549.1 Gene:Phf3 / 213109 MGIID:2446126 Length:2025 Species:Mus musculus


Alignment Length:1846 Identity:407/1846 - (22%)
Similarity:641/1846 - (34%) Gaps:586/1846 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   423 KEVLEPKAPQIGQI---------------IQMPATKSVPAVFALGRG----------------LP 456
            |.:|..|.|.:|..               .|||.:..|.....:..|                ||
Mouse    46 KNMLSDKDPMLGSASNQFCLPVLDSNDPNFQMPCSTVVGLDDIMDEGVVKESGNDTIDEEELILP 110

  Fly   457 STSFLKIRPTHQSL--PVKRPPLPTTPANSNVRRMPAVQLGRIVNSPQEVKEIIINKNMASPKGV 519
            :.| |:.|....|:  |.|.|.|   .|...||.:....:.:..|:.....:....|.:::.|..
Mouse   111 NRS-LRDRVEDNSVRSPRKSPRL---MAQEQVRSLRQSTIAKRSNAATLSTKKPSGKTLSTSKVG 171

  Fly   520 FTNLNTLLGEDNNAATKSSPVPL------RHRAVM--SPSTPRSSYNQQMSPIVVPVPAQAHTPS 576
            ........|::...|:..|..|.      ||...|  :|....||.:..:|............|.
Mouse   172 VKPAERCQGKEEVYASLKSEHPKESRRSGRHAEQMDVAPEVSASSVDSSVSSCAGMKEEAEFDPK 236

  Fly   577 KGFMPIGVDTAQSHKLPAQIVIETHQSSSELAAE--------------------NDKQLDLINSI 621
            ......|.....|.:|...::.||..|..|...|                    .|:|.||::..
Mouse   237 HACNNQGEVNVPSPELDCPLLSETSASVEEKNIEALMECKAKTNSSPLFKFPVREDEQSDLVSGE 301

  Fly   622 VQD---------------ELLK-----STLVEQPV---VNADEDIPKLVKM-----------LES 652
            :.|               |.:|     ....|:|.   |::|.......|.           |::
Mouse   302 LNDTIEGKDAGGKPDQESEEVKFPCEGDQTAEEPESSDVSSDSACANKNKAEKNEGAECHLELKN 366

  Fly   653 TAADLDPPPVSLPTNIFPAPEMQGVGNAAAADPN---------NIMDTANED----EITADFLQH 704
            |...:|.|..|...|     |::.:|.....:.|         |..|....|    |..|..|::
Mouse   367 TVDIVDKPENSPQRN-----ELETLGYGEDTESNDARLQSTEFNKSDLEEVDACAFEPEASTLEN 426

  Fly   705 VVGLIEEDKQFEAEVVKQVLASTEPGTLDAIVSMPTSIEPVDVPQVQAHTNLLPNASLTEPAQSM 769
            .:..:.:....:..:.:.:...|.....|.....|.:|:|..:            .|:|...|||
Mouse   427 TICDVLDQNSKQLNITQSIKMETANLQDDRSGLEPKNIKPKHI------------KSVTHSKQSM 479

  Fly   770 TSLPIACSTPSRSVAA------STPPTSAKVV-RGYGRVIYLPPIEAPTTRAKR------RAQFP 821
            |:     .||.::|||      |...::.|.| |..|.....|..:.|....|:      ::|..
Mouse   480 TT-----ETPRKTVAAKHEVGHSKTKSNVKAVKRNSGEPEPQPDSQRPVKVRKKQGDKVWKSQSC 539

  Fly   822 SAPGMAATSS----------SDAGNLSF-------------GESSLDASINQPLNTSSLSNDSQP 863
            :: |:.:..|          .|...:..             |.|........|:.|..|.:.||.
Mouse   540 NS-GVKSVKSQAHSVLKRMPQDQNTMQISKPLTHPHSDKLHGHSGFSKEPPHPVQTGHLVHSSQK 603

  Fly   864 -----------GSG-----------------------PKRPNPREPSMARRSTAPRRSKKLDASQ 894
                       |.|                       |::|:.......|||:   ||..||...
Mouse   604 QSQKPQQQAAVGKGSSHVKDEHDHPVSEHLKEDDKLKPRKPDRNLQPRQRRSS---RSFSLDEPP 665

  Fly   895 NNDPD--ASESQEDDDD-----------PNKLWCICRQPHNNRFMICCDLCEDWFHGTCVGVTKA 946
            ...||  |:..:|..|.           |:|....|::||.||||:.|..|:|||||.|||::.:
Mouse   666 LFIPDNIATVKKEGSDQTTSIESKYMWTPSKQCGFCKKPHGNRFMVGCGRCDDWFHGDCVGLSLS 730

  Fly   947 MGTDMENKGIDWKCPKCVKRQEERSQPRITDMLVTRPTTQPEQRPSETKVLTTTAEIVQVAAPSA 1011
            ....|..:..::.|.:|...::::     ||:|.|                    ||.:..||..
Mouse   731 QAQQMGEEDKEYVCVRCCAEEDKK-----TDILDT--------------------EIFEAQAPIE 770

  Fly  1012 PRRTLPVVLTVASSPMRIPMAKPAKKFPTGAISHQQQQQLNFIRLGPSPGKRISETLCVVCKRPA 1076
                                            :|.:.:::.                        
Mouse   771 --------------------------------AHSEDKRME------------------------ 779

  Fly  1077 STSSVYCGEECIRKYAQSAIQAHAATKGPLPQNAGAQSLLNNSFDAKKNKKKDLFEDVLRQADTV 1141
                  ||:....|        ||.|                             :|..|.:|..
Mouse   780 ------CGKLTSSK--------HAVT-----------------------------DDKHRHSDDP 801

  Fly  1142 SKVERINVFERKSGRVITGHMAPSAHQFRKWLQENPSFEVLPSGTVQSADAEKRLLKGAPEAATS 1206
            .| .::.:.:|:||...|...:.. ::.:||               |.|...|   ...|.....
Mouse   802 GK-HKVKILKRESGEGKTSSDSRD-NEIKKW---------------QLAPLRK---LSQPHLPRR 846

  Fly  1207 TSEPAVLGVAKKPPEGPAKLSHPQNTTVQASHQLGISSVRPLAKKDKEKTTPTVQAPTPNRIAAG 1271
            :||.....:||   |..|..|..:......:|:     .:...||..||..|.|..|.    |..
Mouse   847 SSEEKSEKIAK---ESTALASTGERVARSGTHE-----KQETKKKKMEKGGPNVHPPA----ATS 899

  Fly  1272 KP--EPVRIGIRRSLREQLLARIKEA--QAAEENSGQPTTQWPTVLEVDQFVKNVELEMFNSFGR 1332
            ||  :.:|..:|.||::.|:.|:.::  :..||.:.:..|:             :|.|:| ||.|
Mouse   900 KPSADQIRQSVRHSLKDILMKRLTDSNLKIPEEKAAKVATK-------------IEKELF-SFFR 950

  Fly  1333 DVGAKYKAKYRSLMFNIKDRKNRTLFEKICAKQVEPRQLVRMTPEQLASQELAKWREEENRHQLD 1397
            |..||||.||||||||:||.||..||:|:...:|.|..|:||:||:|||:|||.||..||||.::
Mouse   951 DTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIE 1015

  Fly  1398 MIKKSELDLLACAQNYVVK-THKGEEVIATKVDVTLPEENVSEASSMADTKQTSLVSEPSTSTLE 1461
            ||:|.:.::   .:..:.| |||||  |..:.|..:.|:..:..           :.|||     
Mouse  1016 MIEKEQREV---ERRPITKITHKGE--IEIESDAPMKEQEAAIE-----------IQEPS----- 1059

  Fly  1462 RSTSREKAGSSKEKRHKSHKHHHRKRSRSRSNSRGRSVDKRHRRQHNEGGEQPGSGEREHR---- 1522
                   |..|.||...|.|......|.|:..:          .||           |:|.    
Mouse  1060 -------ANKSMEKPDVSEKQKEEVDSTSKDTT----------SQH-----------RQHLFDLN 1096

  Fly  1523 ---SREKQSRERDEIVPSPL------PKKRDENDQSPVPKKTAEKKTEASAYNLVDQILESEKTV 1578
               ...:.:...|::.|..:      .:|..:|          |.::.|.|.:....||.|:...
Mouse  1097 CKICIGRMAPPIDDLSPKTVKVVVGGARKHSDN----------EAESLADALSSTTNILTSDLFE 1151

  Fly  1579 EQAANLGKPKPSPKPLPTLPSSLKAPEPMDNYSRYLHGLTTSSLWSGTLKMIDLADFEIVMYPVQ 1643
            |:.....|...||.|.|.:|.:::..      |.:|..|  :.:|.|.:.|..:|.|....|||.
Mouse  1152 EEKQESPKSTFSPTPRPEMPGTVEVE------STFLARL--NFIWKGFINMPSVAKFVTKAYPVS 1208

  Fly  1644 GNCHQLGNLMPSQMDVIGRITRVNVWEYIKKLKKSPTKEVVIVNIFPASPSETYKFDLFFEYLDS 1708
            |:...|...:|..:.|.|||:...||:|::|:|.|.|||:.:|...|.:..:...:.|.|.|..|
Mouse  1209 GSPEYLTEDLPDSIQVGGRISPQTVWDYVEKIKASGTKEICVVRFTPVTEEDQISYTLLFAYFSS 1273

  Fly  1709 RQRLGVLGVDSDQIRDFYIFPLGSGDKLPPALQTAEPVPFYE---EAQRPNTLLGIIVRCLSKRP 1770
            |:|.||...:..|::|.|:.|||:.||:|..|     |||..   |..|||.|||:|:|...|||
Mouse  1274 RKRYGVAANNMKQVKDMYLIPLGAADKIPHPL-----VPFDGPGLELHRPNLLLGLIIRQKLKRP 1333

  Fly  1771 --ADAVPS-TPSVPTPVPALSSKVAKRSRSSISYPAQSSPKRKISTHSTSSKDDEF--------- 1823
              |.|.|| |...|...|             |..|.....|.:..|...:.::.:|         
Mouse  1334 HSASAGPSHTGETPESAP-------------IVLPPDKKGKMESCTEEAAEEESDFFNSFTTVLH 1385

  Fly  1824 ------------DIDAIIKAPIAKLQKTAP----KVVP--------QPSVPNDADEPYSPGGSDD 1864
                        |:....: |:.::.|..|    :.:|        |||....|::|...    |
Mouse  1386 KQRNKPSQPLQEDLPTAAE-PLMEVTKQEPPKPLRFLPGVLIGWDNQPSTLELANKPLPV----D 1445

  Fly  1865 ELVPSAPQRPNDLERQVNEINKQIAAQQM---------EIAGLLKVEPT-GSASSSNVLAAISIP 1919
            :::.|.......:..|...:.:|...:::         ::..:.|||.| |.|....|.|     
Mouse  1446 DILQSLLGTTGQVYEQAQPLVEQSTLKEIPFINDQANPKVEKIDKVEVTEGDAKEIKVKA----- 1505

  Fly  1920 ANLSKILASIKDKTNLPSSADDGDEEYNPEDDITATSSFASKKPRSKGRLAHLS----------E 1974
                       :..::.:|.:.|:|          |||..|.. .|.|.||.||          |
Mouse  1506 -----------ENISVSTSKNSGEE----------TSSVGSSS-ISPGPLASLSLRGKPPDVSTE 1548

  Fly  1975 AELLSM-VPDNLAGVIPRSSRTRHQL 1999
            |.|.:: :|......:....||..:|
Mouse  1549 AFLTNLSIPSKQEESVENKERTLKRL 1574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ppsNP_001247075.1 TNG2 <827..965 CDD:227367 47/207 (23%)
PHD_PHF3_like 914..963 CDD:277027 19/48 (40%)
BRK 1142..1186 CDD:197800 7/43 (16%)
TFIIS_M 1274..1396 CDD:284835 54/123 (44%)
SPOC 1623..1729 CDD:285043 37/105 (35%)
Phf3NP_001074549.1 PHD_PHF3 697..747 CDD:277108 19/49 (39%)
TFIIS_M 904..1017 CDD:369395 54/126 (43%)
PHA03369 <983..1184 CDD:223061 65/265 (25%)
SPOC 1181..1327 CDD:369497 57/152 (38%)
SF-CC1 1916..>2025 CDD:273721
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 108 1.000 Domainoid score I6440
eggNOG 1 0.900 - - E1_KOG1634
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm43861
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11477
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 1 1.000 - - X6674
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.990

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