DRSC/TRiP Functional Genomics Resources

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Protein Alignment pps and mes-4

DIOPT Version :9

Sequence 1:NP_001247075.1 Gene:pps / 41524 FlyBaseID:FBgn0082831 Length:2018 Species:Drosophila melanogaster
Sequence 2:NP_506333.1 Gene:mes-4 / 179824 WormBaseID:WBGene00003222 Length:898 Species:Caenorhabditis elegans


Alignment Length:690 Identity:121/690 - (17%)
Similarity:225/690 - (32%) Gaps:236/690 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1014 RTLPVVLTVASSPMRIPM-AKPAKKFPTGAIS--HQQQQQLNFIRLGPSPG---KRISETLCVV- 1071
            |.|.|.:|:.....:..| ..||...|...:.  ::.:::.|.:.:.|...   |...:..||: 
 Worm   246 RDLNVSITIGGKVEKFEMIICPAHYLPGADVQFYNKHKKRKNAVTVVPKADVTMKSHIKACCVIG 310

  Fly  1072 CKRPASTSSVYCGEECIRKYAQSA-------------IQAHAATKG-PLPQNAGAQSLL-----N 1117
            |::.:::.::.| :.|.|.:....             .|..:...| |:|||    :|:     :
 Worm   311 CEKSSNSKTIMC-KTCCRSFHSGCREVETLNGKPIPDDQCESCVCGDPIPQN----TLILAKWTD 370

  Fly  1118 NSF------DAKKNKKKDLFEDVLRQADTVSKVERINV-FERKSGRVITGHMAPSAHQFRKWL-- 1173
            |||      |..|....:                |.|: |||....|:            :||  
 Worm   371 NSFWLALTLDWYKYPTGN----------------RGNINFERLGYTVV------------QWLIP 407

  Fly  1174 QENPSFEVLPSGTVQSADAEKR-LLKGAPEAATSTSEPAVLGVAKKPPEGPAKLSHPQNTTVQAS 1237
            |||              |.||: |:...|.:..:........:||.                   
 Worm   408 QEN--------------DKEKQPLMSIVPVSDIARLTKNYFSLAKN------------------- 439

  Fly  1238 HQLGISSVRPL--AKKDKEKTTPTVQAPTPNRIAAGKPEPVRIGIRRSLREQLLARIKEAQAAEE 1300
                 |::|.|  .|.:::..|...:.|...:...|:           ||..:..:.:.      
 Worm   440 -----STLRNLWEEKYEEQADTALKRCPYVCKTVFGR-----------LRTSVYYKCEP------ 482

  Fly  1301 NSGQPTTQWPTVLEVDQFVKNVELEMFNSFGRDVGAKYKAKYRSLMFNIK---DRK----NRTLF 1358
                         :::::..|   |:.|..|.|...|...:|.:..:...   .:|    ||.:.
 Worm   483 -------------KLEEYHNN---EVCNCEGADRCTKLSCQYLADDYECPPSCSKKGVCHNRQVS 531

  Fly  1359 EKICAKQVEPRQLVRMTPEQLASQ------ELAKWREEENRHQLDMI--------KKSELDLLAC 1409
            ..|.::::           :||:.      ..||.:.|::.:..:.:        ||..||.::.
 Worm   532 MGIVSEKI-----------KLAATLCKGYGVFAKGQIEKDEYICEYVGEIIDKAEKKRRLDSVSI 585

  Fly  1410 -----AQNYVVKTHKGEEVIA----------------------TKVDVTLPEENVSEASSMADTK 1447
                 |.:|:::.|||..|.|                      |||.|...:|     .|:.||:
 Worm   586 SRDFQANHYMMELHKGLTVDAARYGNISRYINHSCDPNAASFVTKVFVKKTKE-----GSLYDTR 645

  Fly  1448 Q----TSLVSEPSTSTLERSTSRE------KAGS-------SKEKRHKSH-KHHHRKRSRSRSNS 1494
            .    ...:.:....|...:.:.|      :.|:       .|.||.|.. .....|.::...:|
 Worm   646 SYIRAIRTIDDGDEITFSYNMNNEENLPDCECGAENCMGTMGKAKREKPEVADSSEKAAKKNKSS 710

  Fly  1495 RGRSVDKRHRRQHNEGGEQPGSGEREHRSREKQSRERDEIVP---------SPLPKKRDENDQSP 1550
            :.:|| |...|:..|.|:...:.::...|..|.|........         |...|...:|...|
 Worm   711 KKKSV-KNQNRKSQEAGKNGTASKKSEISPSKPSTSSASSTSFVQQASWPISQNKKNLKKNSNQP 774

  Fly  1551 VPK--KTAEKKTEASAYNLVDQILESEKTVEQAANLGKPK 1588
            |..  .|....||.:.:....::|....:..:||:...|:
 Worm   775 VADTGSTLSTSTELNFHEKPQELLSPVSSRSRAASSSTPR 814

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ppsNP_001247075.1 TNG2 <827..965 CDD:227367
PHD_PHF3_like 914..963 CDD:277027
BRK 1142..1186 CDD:197800 11/46 (24%)
TFIIS_M 1274..1396 CDD:284835 18/134 (13%)
SPOC 1623..1729 CDD:285043
mes-4NP_506333.1 PHD_SF 207..269 CDD:304600 6/22 (27%)
SET 537..671 CDD:214614 26/149 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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