DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pps and set-9

DIOPT Version :9

Sequence 1:NP_001247075.1 Gene:pps / 41524 FlyBaseID:FBgn0082831 Length:2018 Species:Drosophila melanogaster
Sequence 2:NP_001379880.1 Gene:set-9 / 177196 WormBaseID:WBGene00017482 Length:1623 Species:Caenorhabditis elegans


Alignment Length:1975 Identity:390/1975 - (19%)
Similarity:618/1975 - (31%) Gaps:715/1975 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 DEKMAMEMQAQSRKIIMQAPGSVKLINAKKRVQAIPLSPVQVKV-----QRLPVKPHQVQQAAQL 279
            ||::..:...|.::..:..|    ::.|::.:|.:...|...:.     ...||......|....
 Worm    11 DEELFEQPPPQQQQPEIAEP----IVMAQEPIQGVSEDPQASEATHEAPDNYPVDHQMENQEFYH 71

  Fly   280 QPKV----QLIRKPIHSPLPRQKPEII-----ANN---SVNARLRPTRAPVKVIAP-PVQE--YI 329
            :|::    |:.:.|:..|.....|..:     |||   ...|..||.....::.|. |.::  :|
 Worm    72 EPQIPEPQQIPQIPVFQPAAYNPPNYVAPQQRANNFGEPAAADARPLTEQEQLAAERPTEDTVWI 136

  Fly   330 EDDDDAQSSDSAEEEN-----ADKAYDSEE------------------MSEESDEFQE------- 364
            :.|||....::....|     :|..||..:                  :.|:.:..::       
 Worm   137 DSDDDTDVEEAILRANFWLPYSDHNYDPPDPADRIILPTEGPFPCIAGLDEDCNIVKQWMPEDAV 201

  Fly   365 --------------------SDNDRDSDMDFDMRHSNRRNP-------------------NKRKR 390
                                |.:.........:||:.:..|                   :.|.:
 Worm   202 GPGSPGTQYRRNQQAGGGLPSTSVASQQQQLPVRHNIQNRPMVAAQPFSIGGNQVEYGGMDSRMQ 266

  Fly   391 VRKVVRQTP----------SKPMKPLPPPPTTP--QHFPELKKRKEVLEPKAPQIGQIIQMPATK 443
            .|.|||..|          ..||:.|.||..:|  ......:::::.:..:|...|.:.|    :
 Worm   267 QRGVVRDGPQYRVMNDFGNGLPMRGLLPPRNSPAANAINRAREQQQQMYHQAGARGSLQQ----R 327

  Fly   444 SVPAVFALGRGLPSTSFLKIRPTHQSLPVKRPPLPTTPANSNVRRMPAVQLGRIVNSPQEVKEII 508
            :.||        |:.      ||..|.......:|...||. :||:|          ||....:|
 Worm   328 AAPA--------PAD------PTPGSYQHIVNAVPGGGANP-MRRVP----------PQARPGMI 367

  Fly   509 ---INKNMASPKGVFTNLNTLLGEDNNAATKSSPVPLRHRAV-MSP--STPRSSYN-QQMSPIVV 566
               .|.|.|.|..|...::|...|...|...:.|    ||.| ::|  .||..... |||:    
 Worm   368 GGAANNNRARPTHVTRPMDTQEFEHPVAPAAAPP----HRVVDVAPHRMTPEQRQELQQMN---- 424

  Fly   567 PVPAQAHTPSKGFMPIGVDTAQSHKLPAQIVIETHQSSSELAAENDKQLDLINSIVQDELLKS-- 629
               .|...|.       ...|.:.:....|||:....:|..|..        .|:.|::||:|  
 Worm   425 ---RQRAAPQ-------FPAAAAQRSAEVIVIQQRPGASSRAPR--------PSMAQEDLLRSPT 471

  Fly   630 -TLVEQ-------PVVNA-----------DEDIPKLVKMLESTAADLDPPPVSLPTNIFPAPEMQ 675
             .|.|:       ||:..           ...|||....|.:...:.|||..|            
 Worm   472 RRLSERVPQEHQTPVLEPRRFQVKVTDTYSTPIPKASDQLPAQLTEEDPPEES------------ 524

  Fly   676 GVGNAAAADPNNIMDTANEDEITADFLQHVVGLIEEDKQFEAEVVKQVLASTEPGTLDAIVSMPT 740
                ||||.|.::.|.|.||.                                    ..::..||
 Worm   525 ----AAAAAPEDVPDAAPEDP------------------------------------PKVILKPT 549

  Fly   741 SIEPVDVPQVQAHTNLLPNASLT----EPAQSMTSLPIACSTPSRSVAASTPPTSAKVVRGYGRV 801
            ....:...:..||.     |.||    :|..|.:.||...:.|.     ..||....|:|.:.:.
 Worm   550 PPHRMTQEEKNAHF-----ARLTTDKEKPTSSTSILPQDAAPPH-----VPPPPPPLVLRPHHQD 604

  Fly   802 IYLPPIEAPTTRAKRRAQFPSAPGMAATSSSDAGNLSF------GESSLDASINQPLNTSS---- 856
            ..|..:::......|:   |..|....|.|..|..|.|      |:|...|:..|...:.|    
 Worm   605 ETLAMVQSVFESKPRQ---PDTPKDKETISKIADLLRFSADEFTGQSGSSAAARQRTVSGSAARA 666

  Fly   857 -----------------LSNDSQPGSG-----------PKRPNP--------------------- 872
                             :....:|.||           .::|.|                     
 Worm   667 QTYQMHHQQQQHHHQMPMDQRKRPSSGRYDALMGAMPLQQQPPPPPSQFQHTDSIAHRPRGRPKG 731

  Fly   873 -REPSMA---RRS----TAPRRSKKLDASQNNDPDA----SESQEDDDDPNKLW---CICRQPHN 922
             |.||:|   :||    |.|.|::.:..|..|..:|    |||:..|:...:.|   |.|...|.
 Worm   732 TRHPSVAVQPQRSGGARTLPPRAQTVAMSARNGANAKNSDSESEGIDEAAEESWTMRCHCGMDHG 796

  Fly   923 NRFMICCDLCEDWFHGTCVGVTKAMGTDMENKGIDWKCPKCV-------KRQEERSQPRITDMLV 980
            :...|.|:.|:.|.|..|:|:|....|.      .:||..|:       |.:..|.|.||.:.| 
 Worm   797 DGDTIECEGCKTWQHMACMGLTLKSNTS------KYKCEMCLPRRLPVSKAEAAREQERILNRL- 854

  Fly   981 TRPTTQPEQRPSETKVLTTTAEIVQVAAPSAPRRTLPVVLTVASSPMRIPMAKPAKKFPTGAISH 1045
             |...:.::|.||     ...:..:.:.||..|::.|:.|...:.|                   
 Worm   855 -RAAARKQKRKSE-----PVEQKQKSSQPSTSRKSAPMALQQPAEP------------------- 894

  Fly  1046 QQQQQLNFIRLGPSPGKRISETLCVVCKRPASTSSVYCGEECIRKYAQSAIQAHAATKGPLPQNA 1110
                             |:::                     :..|::   ||.|...| :.|.|
 Worm   895 -----------------RVAQ---------------------LNDYSK---QASALLFG-MEQTA 917

  Fly  1111 GAQSLLNNSFDAKKNKKKDLFEDVLRQADTVSKVE-RINVFERKSGRVITGHMAPSAHQFRKWLQ 1174
            ||.:||..|...||.::. ..|:.:....|...|: |..:.|      :.||::.|:...|:   
 Worm   918 GADTLLAESRLHKKARRM-FVEEAVEALVTTDLVQIRQVILE------VNGHVSMSSEVKRQ--- 972

  Fly  1175 ENPSFEVLPSG--TVQSADAEKRLLKG-APEAATSTSEPAVLGVAKKPPEGP-AKLSHPQNTTVQ 1235
                    |.|  .:...|.   |:|| |.|......|...:...:|..:.. .:.|...|..::
 Worm   973 --------PGGGNCIFMYDG---LMKGTAGEDMGDGQELVCIDTKRKGNDTKFTRRSCVPNCVLK 1026

  Fly  1236 ASHQLGISS---VRPLAKKD----KEKTTP--------TVQAPTPNRIAAGKPEPVRIGIRRSLR 1285
              |.||.::   :..:|.||    .|.|.|        .|:......:...:..|.....||...
 Worm  1027 --HVLGSNATLGIMIVATKDITRNTEVTLPFDADWRESEVELECAEHMKELQACPFESERRRFAA 1089

  Fly  1286 EQLLARIKEAQAAEENSGQPTTQWPTVLEVDQFVKNVELEMFNSFGRDVGAKYKAKYRSLMFNIK 1350
            |:..|...:.|.|||           ....|:..:.:|.|:    .|:..||.|....:      
 Worm  1090 ERHRAMDHKKQEAEE-----------ARRADEERRRLEEEV----RRERAAKTKQMDEA------ 1133

  Fly  1351 DRKNRTLFEKICAKQVEPRQLVRMTPEQLASQELAK---WREEENRHQL-DMIKKSELDLLACAQ 1411
             .|.|...||...|:.:.::..:|.....|:.|...   .|||....|. :|.::.|        
 Worm  1134 -EKARLEAEKAAEKEKKAKERKKMEASAAAAPESTNSITAREERRIQQAEEMFRRQE-------- 1189

  Fly  1412 NYVVKTHKGE----------------EVIATKVDVTLPEEN--VSEASSMADTKQTSLVSEPSTS 1458
                  .:|:                |...|......||.:  |...|..|..:..|..::||||
 Worm  1190 ------EEGKRKEARRRSKSVTPGVLEAAGTAAREDAPEASIPVPAPSPPASRRSVSRTTQPSTS 1248

  Fly  1459 TLERSTSREKAGSSKEKRH----KSHKHHHRKRSR----------SRSNSRGRS----------- 1498
            :.  :|..|....:|..|.    ||......||.|          :.::||.|:           
 Worm  1249 SF--ATPTEPPAKNKRMRSVVPPKSEPASSAKRVRATTVATPKATTANDSRKRTASATGKTPVAK 1311

  Fly  1499 --------------VDKRHRRQ---------------HNE------GGEQPGSG------EREHR 1522
                          ::|..|.|               .||      .|:.|...      |.|:|
 Worm  1312 RSKNVAPTSFALALIEKELREQARNSTVLEMILPDYIMNEERSGLLAGQSPDFSEVRAQIEEENR 1376

  Fly  1523 SREKQSRERDEIVPSPLPKKRDENDQSPVPKKTAEKKTEASAYNLVDQILESEKTVEQAANLGKP 1587
            .:|: ||:| |.....:.|::.|:.:.  ||||.|.....          :|||.||:|....:.
 Worm  1377 MKER-SRKR-EAKKKAVEKEKKEHRKE--PKKTNEPGPAP----------KSEKAVEKAVEKVEK 1427

  Fly  1588 KP-SPKPLPTLPSS----LKAPEPMDNYSRYLHGLTTSSLWSGTLKMIDLADFEIVMYPVQGNCH 1647
            || ||:..|..|::    ||..|.:|...|  ....:||..|                       
 Worm  1428 KPKSPQKPPAKPTAQNPPLKKTEEVDGIER--EASESSSKES----------------------- 1467

  Fly  1648 QLGNLMPSQMDVIGRITRVNVWEYIKKLKKSPTKEVVIVNIFPASPSETYKFDLFFEYLDSRQRL 1712
               ::.|.:                   ||:|.|..                  |.||...|.:.
 Worm  1468 ---SVAPEE-------------------KKNPKKIT------------------FAEYNSRRSQK 1492

  Fly  1713 GVLGVDSDQIRDFYIFPLGSGDKLPPALQTAEPVPFYEEAQRPNTLLGIIVRCLSKRPADAVPST 1777
            ...|..|                .|||:.....:|..|.....|..|..|       |.|..||:
 Worm  1493 REAGECS----------------TPPAVTRRGFIPSTEGEDLVNVELSAI-------PLDDHPSS 1534

  Fly  1778 ----------PSV-----PTPVPALSSKVAKRSRSSISYPAQSSPKRKISTHSTSSKDDEFDI-D 1826
                      |||     ||.|...|.....|:|.:.|..|..:|    :.||.|.:|..|.: .
 Worm  1535 SNTAPTTTIAPSVGGAPKPTSVVVKSPSTRSRTRGAASESADDAP----AEHSMSLQDRVFSMFG 1595

  Fly  1827 AIIKAPIAKLQKTAPKVVPQPSVPN 1851
            :.:.||       ||...|..:..|
 Worm  1596 STVDAP-------APPPPPASAETN 1613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ppsNP_001247075.1 TNG2 <827..965 CDD:227367 47/218 (22%)
PHD_PHF3_like 914..963 CDD:277027 15/51 (29%)
BRK 1142..1186 CDD:197800 9/46 (20%)
TFIIS_M 1274..1396 CDD:284835 27/124 (22%)
SPOC 1623..1729 CDD:285043 12/105 (11%)
set-9NP_001379880.1 PRK03427 <9..>132 CDD:235124 23/124 (19%)
Med15 196..>373 CDD:312941 34/205 (17%)
PHD_Bye1p_SIZ1_like 788..831 CDD:277045 14/48 (29%)
SET_SETD5-like 927..1059 CDD:380927 32/154 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.030

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