DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pps and nsd2

DIOPT Version :9

Sequence 1:NP_001247075.1 Gene:pps / 41524 FlyBaseID:FBgn0082831 Length:2018 Species:Drosophila melanogaster
Sequence 2:NP_001076020.1 Gene:nsd2 / 100000709 ZFINID:ZDB-GENE-030131-2581 Length:1461 Species:Danio rerio


Alignment Length:869 Identity:177/869 - (20%)
Similarity:296/869 - (34%) Gaps:250/869 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   860 DSQPGSGPKRPNPREP-SMARRSTAP-RRSKKLDASQNNDPD----------ASESQEDDDDPNK 912
            ||:.||.|..|.|:.| ||.:.|.:| .|:..:|..  .||.          |:..||....   
Zfish     3 DSKGGSLPAMPEPKSPTSMKQLSDSPGGRNGLVDGI--TDPTMLMNKAATQLAATPQESVPQ--- 62

  Fly   913 LWCICRQPHNNRFMICCDLCEDWFHGTCVGVTKAMGTDMEN---KGID----------------- 957
              .|....||:......||.....:|....:.|........   ||::                 
Zfish    63 --MIGSHGHNHTHEHLKDLTSRLLNGDTEKIPKLCAAPAGQPLLKGVEPVSQHASPPRKTSVSPE 125

  Fly   958 --WKCPKCV----------------KRQEERSQP-RITDMLVTRPTTQPEQRPSETKVLTTTAEI 1003
              .|..|||                ::.||...| |:.:.::|.||.:.:::..:..|       
Zfish   126 LTVKITKCVVNLGGKPNRYEVDYTEEKAEETDAPLRLPEGVLTSPTARRDRQKKKGMV------- 183

  Fly  1004 VQVAAPSAPRRTLP--VVLTVASSPMRIPMAKPAKK----------FPTGAISHQQQQQLNFIRL 1056
                     |:.:|  .:||.|:|..:.|:..|...          .|..:|.|........:..
Zfish   184 ---------RKRIPPYPILTHAASSDQSPLLHPTINSNDITIEPCGLPVESIEHTHGDMPTCVTA 239

  Fly  1057 GPSPGKRISETLCVVCKRPASTSSV-----YCGEECIRK-YAQSAIQAHAATKGPL--------- 1106
            .|.. :.:|:     |:.......|     ..||..::: |.::....|.:....:         
Zfish   240 FPDE-QPLSD-----CEETVDAQGVDETDDAQGENDVKESYTETQSNVHFSVGDVIWTKVSGYPW 298

  Fly  1107 -PQNAGAQSLLNNSFDAKKNKKKDLFEDVLRQADTVSKVERINVFER---------------KSG 1155
             |.........|..|.:|.|.:..|...|....||   .||..|||:               :|.
Zfish   299 WPCMITTDPEFNMHFRSKVNSRTGLLYHVQYFGDT---PERGYVFEKCIVTFSGKHQYQSLSRSN 360

  Fly  1156 RV---ITGHMAPSAHQFR-KWLQENPSFEVLPSGTVQSADA-----EKRLLKGA----------- 1200
            ::   |:|.......:|| ||       |:   |..|:.:|     |:||.|.:           
Zfish   361 QLPINISGRKRAVPRKFRQKW-------EI---GVSQAKEALGLLTEERLAKFSFVYEDGKAQLN 415

  Fly  1201 PEAATSTSEPAVLGVAKKP----PEGPAKLSHPQNTTVQASHQLGISSVRPLAKKDKEKTTPTVQ 1261
            |.......|....|:.::|    |:....|:.|.:|....::....|::..|.....:.:|.:.:
Zfish   416 PHMLQVLEEQRNQGLQEEPVQREPQELVSLTPPDSTHSSPTNSSTTSTIPSLFSNPIDSSTSSGK 480

  Fly  1262 APTPNRIAAGKPEPVRIGIRRSLREQLLARIK----EAQAAEENSGQPTTQWPTVLEVDQFVKNV 1322
            ...|.:  |.||     .::.:.|:|..:.|:    ||.:|::   .|.|:           ..|
Zfish   481 TALPRK--ARKP-----SVKTNRRKQRSSTIEWIVTEASSAKQ---MPLTE-----------STV 524

  Fly  1323 ELEMFNSFGRDVGAKYKAKYRSLMFNIKDRKNRTLFEKIC--------AKQVEPRQLVRMTPEQL 1379
            :.|        |..::|.|.::   |...|..|.. :.:|        |.|.:||.:.:..|  .
Zfish   525 QCE--------VNTEHKKKGKT---NAGKRPYRKK-DLLCIDLDLQPKASQKKPRHIRQKFP--A 575

  Fly  1380 ASQELAKWREEENRHQLDMIKKSELDLLACAQNYVVKTHKG-EEVIATKVDVTLPEENVSEASSM 1443
            |...:.|             :|.:..:..|.....|.|..| .||.|:.....|.|:..:.:..|
Zfish   576 APNSVKK-------------RKIKAGVSICDTLNTVSTSAGLSEVKASAPSTKLWEKEDASSKGM 627

  Fly  1444 -------ADTKQTSLVSEPSTSTLERSTSR---EKAGSS--------KEKRHKSHKHHHRKRSRS 1490
                   .::||...:.....|.||:...:   .||.||        :.:|.|:.:..:||||:.
Zfish   628 KKVCKRSRESKQDVTLQPKKKSKLEKDFKKWKCPKAASSAPAAVPAPRGRRRKTDRDENRKRSKK 692

  Fly  1491 RSNSRGRSVDKRHRRQHNEGGEQPGSGEREHRSREKQSRERDEIVPSPLPKKRDENDQSPVPKKT 1555
            .|........||.|::..|.|.|.....::.|.......||.:   ||    .|..|:|. |.|.
Zfish   693 ASKEEPPPKAKRGRKRKEESGRQSFPASKKCRPSSYAEPERPD---SP----SDSTDESH-PSKK 749

  Fly  1556 AEKKTEASAYNLVDQILESEKTVE 1579
            ||:...|...::   .|..|:|.|
Zfish   750 AERTPGAKKESV---CLVCEQTGE 770

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ppsNP_001247075.1 TNG2 <827..965 CDD:227367 32/154 (21%)
PHD_PHF3_like 914..963 CDD:277027 10/70 (14%)
BRK 1142..1186 CDD:197800 13/62 (21%)
TFIIS_M 1274..1396 CDD:284835 24/133 (18%)
SPOC 1623..1729 CDD:285043
nsd2NP_001076020.1 PWWP 283..394 CDD:295359 25/123 (20%)
DTHCT 688..>758 CDD:285332 23/77 (30%)
PHD_SF 761..803 CDD:304600 4/13 (31%)
PHD_SF 808..854 CDD:304600
PHD_SF 855..908 CDD:304600
PHD4_NSD2 925..965 CDD:277127
WHSC1_related 970..1063 CDD:99899
AWS 1103..1153 CDD:197795
SET 1154..1277 CDD:214614
PHD_SF 1329..1371 CDD:304600
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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