DRSC/TRiP Functional Genomics Resources

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Protein Alignment DNAlig3 and lig4

DIOPT Version :9

Sequence 1:NP_650187.2 Gene:DNAlig3 / 41518 FlyBaseID:FBgn0286075 Length:806 Species:Drosophila melanogaster
Sequence 2:NP_001016981.1 Gene:lig4 / 549735 XenbaseID:XB-GENE-964443 Length:911 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNAlig3NP_650187.2 DNA_ligase_A_N 36..200 CDD:282522
dnl1 88..604 CDD:273147
Adenylation_DNA_ligase_III 242..454 CDD:185712
OBF_DNA_ligase_III 460..598 CDD:153436
lig4NP_001016981.1 DNA_ligase_A_N 20..208 CDD:282522
dnl1 86..606 CDD:273147
Adenylation_DNA_ligase_IV 240..461 CDD:185713
OBF_DNA_ligase_IV 464..601 CDD:153437
BRCT 659..733 CDD:214602
DNA_ligase_IV 753..786 CDD:288294
BRCT 809..898 CDD:278934
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D189866at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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