DRSC/TRiP Functional Genomics Resources

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Protein Alignment DNAlig3 and DNAlig1

DIOPT Version :9

Sequence 1:NP_650187.2 Gene:DNAlig3 / 41518 FlyBaseID:FBgn0286075 Length:806 Species:Drosophila melanogaster
Sequence 2:NP_611843.2 Gene:DNAlig1 / 37791 FlyBaseID:FBgn0262619 Length:747 Species:Drosophila melanogaster


Alignment Length:689 Identity:170/689 - (24%)
Similarity:290/689 - (42%) Gaps:139/689 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 KGLHNEDNKLD-------TFRRICDEIAGESSYLKKAERLQRFFEKGS--SGKGFKGDTVLWVQF 79
            |..:.:|.|:.       || ::.:|..|.   ||..:.|..||....  |.:.......|.:..
  Fly   115 KNAYWKDKKVTPYLALARTF-QVIEETKGR---LKMIDTLSNFFCSVMLVSPEDLVPSVYLSINQ 175

  Fly    80 LIPAANQRVYNLQNKALIKLFSRIFNAD------QQQMHLDLEQDGDVSETLRKHFAASKKLKPQ 138
            |.||.......:....|:|...:....:      |.|:..||   |.|:|..|    .|:::..|
  Fly   176 LAPAYEGLELGVAETTLMKAICKATGRNLAHIKSQTQLTGDL---GIVAEQSR----VSQRMMFQ 233

  Fly   139 KQSKLYLQEVEEMLLHLVERTKEDEQTDLLQKLCSKATDLDLRTFIRLVKHDLRINARARHILDA 203
             .:.|.:::|...|..:.:.:.:.:. ||:..:.......:.|.|||.:...|||....:.:|.|
  Fly   234 -PAPLNVRDVFRKLREIAKLSGQSKM-DLVYNMFVACRSSEARFFIRSLIGKLRIGIAEQSLLTA 296

  Fly   204 FG-----------------PDAY------------------PAYQSSRDLVAIVEQFATKENKNY 233
            ..                 ||.|                  |.|..   ::..:.::..||.:  
  Fly   297 LAIGLVKKNHIDDCKASKVPDVYKDEIVDTTLLLKTAYCQCPNYDI---IIPAILKYDIKELQ-- 356

  Fly   234 ASSPVKKTKKTSSSAIQVMTPISPMLASPCKSVEDAFKK-SPTGLYSEIKYDGERVQIHK-QGND 296
                       ....:....|:.||||.|.|.|.:.|:: ....:..|.||||||.|||: :..:
  Fly   357 -----------ERCPMHPGMPLRPMLAQPTKGVHEVFERFGGMQITCEWKYDGERAQIHRNEKGE 410

  Fly   297 FKFFSRNLK------PVVDHKIRALKKYIPQAFPGGGEMILDSEIILVDTDTGALLPFGSLGAHK 355
            ...||||.:      |.:..:..||.|...:::      |:||||:..|.:...:|||..|...|
  Fly   411 ISIFSRNSENNTAKYPDLIARSTALLKGDVKSY------IIDSEIVAWDVERKQILPFQVLSTRK 469

  Fly   356 KQTF----ANAAVCLFVFDCILYDGEDLTQLPFRKRREILEQNIQPIKSHVQLSESEFLKTTREL 416
            ::..    ....||:::||.:..:|..|......:||::|.::.|.::...:.:.:.......|:
  Fly   470 RKNVDIEEIKVQVCVYIFDLLYINGTALVTKNLSERRKLLLEHFQEVEGEWKFATALDTNDIDEV 534

  Fly   417 AAMTARVLHANLEGVVLKS--PTSTYQPGK--RNWLKVKKDYLFDGKMADTADLVVLGAWYGSGK 477
            .......:..|.||:::|:  ..:||:..|  |||||:|||||  ..:.|:.||||:|.:.|.|:
  Fly   535 QQFLEESIKGNCEGLMVKTLDEEATYEIAKRSRNWLKLKKDYL--SNVGDSLDLVVIGGYKGKGR 597

  Fly   478 KGGTLSIFLMGCYDAFGRLWKTVTKVHSGLDDATNAEVHKSLIKLTERADANAIPSWLLCSKSLV 542
            :.||...||:.|||.....::::.|:.:|..| .:.:.|...:   .:...:|..|:.....||.
  Fly   598 RTGTYGGFLLACYDTENEEYQSICKIGTGFTD-EDLQTHSEFL---GKHVTSAAKSYYRYDPSLE 658

  Fly   543 PDVLAKDPMKMPVWEITGAEFTKSDAHTAS--------GISVRFPRITRRRSDK---SAKEANDL 596
            ||... :|::  |||:..|:.:.|..|.|:        |||:||||..|.|.||   :|.:||.:
  Fly   659 PDHWF-EPVQ--VWEVKCADLSLSPIHRAAIGIVDGERGISLRFPRFIRIRDDKNSENATDANQV 720

  Fly   597 AHLEDLFEASKSNVNVDLLLANCSKDETAMNNKTTPEKE 635
            ||:..                  |:|:...|.|::.:.|
  Fly   721 AHMYQ------------------SQDQVKNNQKSSTQME 741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNAlig3NP_650187.2 DNA_ligase_A_N 36..200 CDD:282522 37/171 (22%)
dnl1 88..604 CDD:273147 148/583 (25%)
Adenylation_DNA_ligase_III 242..454 CDD:185712 63/227 (28%)
OBF_DNA_ligase_III 460..598 CDD:153436 47/148 (32%)
DNAlig1NP_611843.2 PLN03113 1..745 CDD:215584 170/689 (25%)
DNA_ligase_A_N 126..292 CDD:282522 38/178 (21%)
Adenylation_DNA_ligase_I_Euk 358..576 CDD:185710 63/223 (28%)
OBF_DNA_ligase_I 581..726 CDD:153438 49/169 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45442866
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1793
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D274264at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45674
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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