DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34402 and csmd3

DIOPT Version :9

Sequence 1:NP_001097756.1 Gene:CG34402 / 41513 FlyBaseID:FBgn0085431 Length:695 Species:Drosophila melanogaster
Sequence 2:XP_017950395.2 Gene:csmd3 / 100487157 XenbaseID:XB-GENE-6051294 Length:3646 Species:Xenopus tropicalis


Alignment Length:318 Identity:76/318 - (23%)
Similarity:118/318 - (37%) Gaps:67/318 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 GYFHSPQFPAHYPAHIKCAYKFIGRPDTHVEILFEELQLPPVVSGGCQLDALTLFDAESAHMNSV 277
            |...||.||..||....|.:..:|.....::|.|:...|..      :.|.|:|:|.. .|..:.
 Frog    18 GTIESPGFPYGYPNGANCTWVIVGEEQNRIQIAFQSFALEE------EYDYLSLYDGH-PHPTNF 75

  Fly   278 IDVICSSRPTRRLVSTGPDLLLEFNASSNRTAKGFRGKYKFV-SNDLGVPNASVPPPAVLEAASV 341
            ...:........:.|||....|...:....:|.||:..|:.: |...|  |..|||..||..   
 Frog    76 RTRLTGFHLPPPVTSTGSVFSLRLTSDFAVSAHGFKIFYEELRSGSCG--NPGVPPKGVLSG--- 135

  Fly   342 VVKQEKLQQEQASAAKENSLMSDVELSKPGRSFEQCKQTFDSRVNKSGIFDSNQLLLAKHALGGV 406
             .|.|...:.:.|......|....:|:....|....  |:|..|         .:..|:.|.||.
 Frog   136 -TKFEIGDKVRYSCVTGYILDGHPQLTCIANSASTA--TWDFPV---------PICRAEDACGGT 188

  Fly   407 VIGGSRVLQCRYEFEAQAPERVQIRFHDFNVPTEHENSTGC------QPGDALHVV---TELRGR 462
            |.|.|.::        .:|          |.|.|:.|:..|      :|||.:.:|   ..:..:
 Frog   189 VRGASGII--------SSP----------NFPNEYHNNADCTWTVVTEPGDTISLVFTDFHMEEK 235

  Fly   463 YETQEL---------LCGAFLPKPLMSSGQQLHLQFVGKYPPTMTNKVQYYGFRAEYR 511
            |:..|:         |.|..:|.|::|:...|.|.||      ..|..:|.||.|:|:
 Frog   236 YDYLEIEGSDPPKIGLSGMNVPPPVISNKNWLRLHFV------TDNNHRYRGFSAQYQ 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34402NP_001097756.1 CUB 195..318 CDD:238001 25/104 (24%)
CUB <414..512 CDD:238001 27/116 (23%)
CUB 527..644 CDD:238001
csmd3XP_017950395.2 CUB 9..115 CDD:238001 24/103 (23%)
CCP 122..180 CDD:153056 16/74 (22%)
CUB 185..287 CDD:238001 31/125 (25%)
CCP 426..484 CDD:153056
CUB 488..596 CDD:238001
CCP 604..658 CDD:153056
CUB 661..768 CDD:238001
CCP 774..832 CDD:153056
CUB 835..942 CDD:238001
CCP 950..1003 CDD:214478
CUB 1007..1115 CDD:238001
CCP 1122..1178 CDD:153056
CUB 1181..1288 CDD:238001
CCP 1294..1351 CDD:153056
CUB 1354..1462 CDD:238001
CCP 1468..1525 CDD:153056
CUB 1528..1635 CDD:238001
CCP 1641..1698 CDD:153056
CUB 1702..1809 CDD:238001
CCP 1818..1876 CDD:153056
CUB 1879..1986 CDD:238001
CCP 1992..2048 CDD:153056
CUB 2051..2158 CDD:238001
CCP 2164..2219 CDD:214478
CUB 2223..2329 CDD:238001
Sushi 2335..2392 CDD:395037
CUB 2400..2506 CDD:238001
CCP 2509..2568 CDD:153056
PHA02927 2567..2811 CDD:222943
PHA02927 2694..2931 CDD:222943
PHA02927 2868..3108 CDD:222943
PHA02927 3108..3347 CDD:222943
CCP 3351..3407 CDD:153056
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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