DRSC/TRiP Functional Genomics Resources

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Protein Alignment MBD-R2 and SET4

DIOPT Version :10

Sequence 1:NP_731688.2 Gene:MBD-R2 / 41498 FlyBaseID:FBgn0038016 Length:1169 Species:Drosophila melanogaster
Sequence 2:NP_012430.1 Gene:SET4 / 853339 SGDID:S000003641 Length:560 Species:Saccharomyces cerevisiae


Alignment Length:383 Identity:76/383 - (19%)
Similarity:127/383 - (33%) Gaps:111/383 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   783 SRSCKRAR--------LSPSKRPSGSRKSNRQRSQRRPILSDNPAGHGLTEQDVEETRQSFNT-- 837
            ||..::.|        :|.|...|.:...::......|:...:.|...|........| :|||  
Yeast     9 SRHIRQGRTYTTTDKVISRSSSYSSNSSMSKDYGDHTPLSVSSAASETLPSPQYMPIR-TFNTMP 72

  Fly   838 ---PTP------DTRIDSKKRRSGAATTPISSIDSPAMGDSVSTPSSNDQTDINAALAPPPAETL 893
               |||      |..|.:....||::.|                 :|.::..|.||:|...|.|:
Yeast    73 TAGPTPLHLFQNDRGIFNHHSSSGSSKT-----------------ASTNKRGIAAAVALATAATI 120

  Fly   894 ------------SKAPQYIKENGELIRIV-RMRQEEIIN-----CICEYGE-EDGLMIQCELCLC 939
                        ||......|:.:..:|. .||.|:  |     |||...: :|.|.|||..|..
Yeast   121 PFPLKKQNQDDNSKVSVTHNESSKENKITPSMRAED--NKPKNGCICGSSDSKDELFIQCNKCKT 183

  Fly   940 WQHGACNGIVKEADVPDKYVCYICRNPQRGRDSMRFKHDQDWLFEGKLPVAAYHTANPQATKQFE 1004
            |||..|....|...:...:||..|.:..:    ::....:..:|..|:.                
Yeast   184 WQHKLCYAFKKSDPIKRDFVCKRCDSDTK----VQVNQVKPMIFPRKMG---------------- 228

  Fly  1005 LLKRSHTLTGNLLDAKRSMHSLLVKINIARNRCHPKLYLWAKKWDEDNLDSTALTPVKR-AKLEA 1068
                         |.:....|.:|..:.:....|           :.::::....|.|| ....|
Yeast   229 -------------DERLFQFSSIVTTSASNTNQH-----------QQSVNNIEEQPKKRQLHYTA 269

  Fly  1069 PDLPNVPQPEAAIDPEECQYRLIEHIKVQQSLVLDRLNDIEAEMDELEKEDTLDDLKD 1126
            |...|    ..:|..:..|.:|:    |....:...||::.:..|...|..|:.:.||
Yeast   270 PTTEN----SNSIRKKLRQEKLV----VSSHFLKPLLNEVSSSNDTEFKAITISEYKD 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MBD-R2NP_731688.2 THAP 5..84 CDD:461662
MBT_PHF20L1-like 215..282 CDD:439094
Tudor_PHF20-like 288..337 CDD:410457
MeCP2_MBD 449..522 CDD:238690
PHD_SF 919..963 CDD:473978 17/49 (35%)
PRK04778 <1099..>1153 CDD:179877 7/28 (25%)
SET4NP_012430.1 PHD_SF 163..207 CDD:473978 16/43 (37%)
SET_SpSET3-like 346..527 CDD:380960
Blue background indicates that the domain is not in the aligned region.

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