DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MBD-R2 and AT4G10600

DIOPT Version :10

Sequence 1:NP_731688.2 Gene:MBD-R2 / 41498 FlyBaseID:FBgn0038016 Length:1169 Species:Drosophila melanogaster
Sequence 2:NP_192798.1 Gene:AT4G10600 / 826652 AraportID:AT4G10600 Length:237 Species:Arabidopsis thaliana


Alignment Length:73 Identity:22/73 - (30%)
Similarity:36/73 - (49%) Gaps:16/73 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   918 INCICEYGEEDGL-MIQCELCLCWQHGACNGIVKEADVPDKYVCYICRNPQRGRDSMRFKHDQDW 981
            ::|:|....:||. |:.|:.|..|.|..|:..||..|:   :||:.|          :.|:::|.
plant    14 VDCVCGVNFDDGKEMVDCDECGVWVHTWCSRYVKGDDL---FVCHKC----------KIKNNEDE 65

  Fly   982 LFEGKLPV 989
            |  .||.|
plant    66 L--SKLSV 71

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MBD-R2NP_731688.2 THAP 5..84 CDD:461662
MBT_PHF20L1-like 215..282 CDD:439094
Tudor_PHF20-like 288..337 CDD:410457
MeCP2_MBD 449..522 CDD:238690
PHD_SF 919..963 CDD:473978 15/44 (34%)
PRK04778 <1099..>1153 CDD:179877
AT4G10600NP_192798.1 PHD_SF 15..57 CDD:473978 15/44 (34%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.