DRSC/TRiP Functional Genomics Resources

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Protein Alignment MBD-R2 and MBD4

DIOPT Version :10

Sequence 1:NP_731688.2 Gene:MBD-R2 / 41498 FlyBaseID:FBgn0038016 Length:1169 Species:Drosophila melanogaster
Sequence 2:NP_191862.1 Gene:MBD4 / 825478 AraportID:AT3G63030 Length:186 Species:Arabidopsis thaliana


Alignment Length:228 Identity:48/228 - (21%)
Similarity:80/228 - (35%) Gaps:72/228 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   353 KSPTPVGTPVSSAPVAPKRASTGSLGGSSGSSGSKKSKCAPQRRDWPLLDMAS--LDIASLGL-- 413
            |....:|.|  :.|.|.|..:.|.|   ..:..::...|    ..|.::|...  .||.|..|  
plant     2 KEEEEIGKP--AKPKAKKDVAPGRL---IDTYAAQCDNC----HKWRVIDSQEEYEDIRSKMLED 57

  Fly   414 ---------------PEIPHDGEWTCHWVNDQPIGTEGFLIVGEHQKPTVIVQDWRLPPGWIKHM 463
                           .:|.:|...|  ||.|:| |..                  :.|.|     
plant    58 PFNCQKKQGMSCEEPADIDYDSSRT--WVIDKP-GLP------------------KTPKG----- 96

  Fly   464 YQRSNVL----GKWDVILVSPSGKRFRSKSDLKLFLESQNLVYNPDVYDFSIHRRRAKDINAYVY 524
            ::||.||    .|.|....:|:||:.||::::..|:|:.....|..:.||:....:..:...   
plant    97 FKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEIAAFVEANPEFRNAPLGDFNFTVPKVMEDTV--- 158

  Fly   525 THGYNPQPPPKPR---PMDVSMNSTLDQSITSQ 554
                    ||.|:   |...:..:|.::|...|
plant   159 --------PPDPKLGSPFPSTTTTTSEKSSVKQ 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MBD-R2NP_731688.2 THAP 5..84 CDD:461662
MBT_PHF20L1-like 215..282 CDD:439094
Tudor_PHF20-like 288..337 CDD:410457
MeCP2_MBD 449..522 CDD:238690 18/76 (24%)
PHD_SF 919..963 CDD:473978
PRK04778 <1099..>1153 CDD:179877
MBD4NP_191862.1 zf-CW 28..75 CDD:462181 7/50 (14%)
MeCP2_MBD 87..159 CDD:238690 20/106 (19%)
Blue background indicates that the domain is not in the aligned region.

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