DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MBD-R2 and phf20a

DIOPT Version :9

Sequence 1:NP_731688.2 Gene:MBD-R2 / 41498 FlyBaseID:FBgn0038016 Length:1169 Species:Drosophila melanogaster
Sequence 2:XP_021335514.1 Gene:phf20a / 563332 ZFINID:ZDB-GENE-070912-270 Length:932 Species:Danio rerio


Alignment Length:1091 Identity:226/1091 - (20%)
Similarity:399/1091 - (36%) Gaps:329/1091 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 IGARLEALSVEGNWLPARIVEVNETEQTLLVRFER-NHKLKVSPSTSGSFQEWMAIKSERLR--- 277
            :||.|||.....||..|.|.:::..::.:||.:.: :|:          :.||....|..||   
Zfish    15 VGASLEARDSLKNWYVANIEKIDYEDEKVLVHYRQWSHR----------YDEWFDWASPYLRPVE 69

  Fly   278 -------QRLSNRVLPVFELDEKCMARWSGPRKFPGTIRKLLGNDTYEVLFDDGYVKNVRAVHMN 335
                   .|..:..:|.|.::::.:|.||..|.:|..:..:..:.:|.|.|.||.|:.|:.:|:.
Zfish    70 RVQLRREARQDDSFIPGFHVNDRVLASWSDCRFYPAKVLAVNKDASYTVKFYDGVVQTVKGIHVK 134

  Fly   336 KMPKQLPPVQVAEEGASKSPTPVGTPVSSAPVAPKRASTGSLGGSSGSSGSKKSKCAPQRRDWPL 400
            ...|:... :::::...|       ||...  |.|........|...::|  ::.|.|::.:   
Zfish   135 PFTKERRK-KLSDQNGEK-------PVIQQ--AEKEIQENEANGDKQAAG--QTNCVPEKDE--- 184

  Fly   401 LDMASLDIASLGLPEI-PHDGEWTCHWVNDQPIGTEGFL-IVGEHQKPTVIVQDWRLPPGWIKHM 463
                  |    |:.|: ..:||.....|.::.:..|..| .:|:|.                   
Zfish   185 ------D----GISEVNGEEGEQMRIKVENESVKEERDLEEIGQHN------------------- 220

  Fly   464 YQRSNVLGKWDVILVSPSGKRFRSKSDLKLFLESQNLVYNPDVYDFS--------------IHRR 514
            |.:|.|          ..|..|..|.:..:.....:.:::.:| :||              :.::
Zfish   221 YSKSLV----------KKGSGFEEKEEEVMVKMEDSALFDSNV-NFSESTVKRNETEETDVLAQQ 274

  Fly   515 RAKDINAYVYTHGYNP--QPPPKPRPMDVSMNSTLDQSITSQHSLPSTPMPVKESQYMEAPVASL 577
            :.:::......|....  |...:.|.:.::..|:......|:.|........:::|..|.....|
Zfish   275 KKEEVEEQCLVHDKKARRQRIKRKRRLSMARRSSKKNKTDSEKSHNDGKPNNQQTQGKEPDSLHL 339

  Fly   578 MPPAE-LMSPQTQPADET-KPKIEAEILEASEGGTSQLMLADP--HVVENGFAFIGGLKVKIQDN 638
            ..|:. ..:.|.|...|| ||....:....:....|:    :|  .|:.|....:  |.:.:..|
Zfish   340 TQPSNGTSASQAQCQSETFKPTAVRKQAFHNPNRFSR----EPLYRVIRNQPPPV--LSINLDHN 398

  Fly   639 LYVCPREDCAKTYRKEDFLLIHIRHYHKEFAEHVSHCP----KMQELAVKRTHPSSIDQVEAVPK 699
            ||.|....|:|::||...|..|:::||.|      .||    :.:|:..|.|             
Zfish   399 LYKCNTPGCSKSFRKAKLLHYHMKYYHGE------ECPIEPEQTREMDKKTT------------- 444

  Fly   700 NQIPNQQFFAKMHQQDLQQSRSFKRQSVSATATSSTPSDITPTKALLSPKMEPPSVSPTVESGIK 764
                       ::..|..:.|         ..||...:.:|.....|:|        ||..    
Zfish   445 -----------LNSHDGSKKR---------CVTSRECARVTVKNRSLAP--------PTAS---- 477

  Fly   765 QEDVSLDAGPTQSFN--PSLSRSCKRARLSPSKRPSGSRKSNRQRSQRRPILSDNPAGHGLTEQD 827
                      ||::.  |.|....:..:|..:.:    |..|::|.:|...:......:.|.|:.
Zfish   478 ----------TQNYQQWPLLKDKTRENQLDDTMQ----RCYNKERDRRFMEMESVKERNRLKEKQ 528

  Fly   828 VEETRQSFNTPTPDTRIDSKKRRSGAATTPISSIDSPAMGDSVSTPSSND--QTDINAALAPPPA 890
                |:.|      .||..|:::....||  |..||.:...|.|...|.|  :.|::...:|...
Zfish   529 ----RRDF------LRIKLKEKKKIRKTT--SDEDSISDWSSESCGWSEDEMEADLDVITSPLSC 581

  Fly   891 ETLSKAPQYIKENGELIRIVRMRQEEIINCICEYGEEDGLMIQCELCLCWQHGACNGIVKEADVP 955
            .:::...:               .:|.:.|:||..||:..|:|||.||.||||.|.|:::| :||
Zfish   582 SSVASTTE---------------SQETVRCVCEADEENDFMLQCEECLYWQHGTCMGLLEE-NVP 630

  Fly   956 DKYVCYICRNPQ------RG-RDSMRFKHDQDWLFEGKL-PVAAYHTANPQATKQFELLKRSHTL 1012
            ::|.|:|||:..      || |.|:|:.:|:|||..|.: .::.....:.|..|:   :..:|.|
Zfish   631 ERYSCFICRDSSGLERRVRGQRQSLRYWYDRDWLSTGHMYGLSFLENYSHQNGKK---IAATHQL 692

  Fly  1013 TGNLLDAKRSMHSLLVKINIARNRCHPKLYLWAKKWD---------------------------- 1049
            .|::......:..|.:||::.:|:.||.|.||.:.|.                            
Zfish   693 LGDVQHVVEVLSGLQLKISVLQNQTHPDLKLWRQPWKPTERSRMKSKALHDAKTVSSSAGLETIE 757

  Fly  1050 -------------------------------------------EDNLDSTALTPVKR-------A 1064
                                                       ||.|.||...|:..       .
Zfish   758 NKEAFSSSFQDYISSEHCYQKPQTLYQVLEPRLVLKTRVESLLEDRLHSTERVPMNEQHYNGDML 822

  Fly  1065 KLEAPDLPNVPQP-----EAAID---------PEECQYRLIEHIKVQQSLVLDRLNDIEAEMD-- 1113
            |.....|.|..:.     ||..|         |::.:..|::||:..|..|..|::.||.|:|  
Zfish   823 KTSNSQLFNHSKVIGEKCEAGADGGGDKSGAQPQQWKVNLLDHIETVQEEVTHRMDFIERELDVL 887

  Fly  1114 --------ELEKEDTLDDLKDADISTTKEALATFIKELETMKRLAKLNQVA 1156
                    |||..:.||.|.:         |...||:|  :..|.|:.|||
Zfish   888 ENWLDCTGELEPPEPLDRLPE---------LKHSIKQL--LSELGKVQQVA 927

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MBD-R2NP_731688.2 THAP 4..86 CDD:283206
TUDOR 292..329 CDD:119391 11/36 (31%)
MeCP2_MBD 449..522 CDD:238690 9/86 (10%)
PHD_SF 919..963 CDD:304600 22/43 (51%)
phf20aXP_021335514.1 MBT 3..68 CDD:327428 17/62 (27%)
TUDOR 90..135 CDD:119391 13/44 (30%)
PHD_SF 595..638 CDD:328929 22/43 (51%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574590
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 198 1.000 Inparanoid score I3768
OMA 1 1.010 - - QHG47145
OrthoDB 1 1.010 - - D147824at2759
OrthoFinder 1 1.000 - - FOG0001785
OrthoInspector 1 1.000 - - otm25367
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR15856
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2262
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
99.100

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