DRSC/TRiP Functional Genomics Resources

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Protein Alignment MBD-R2 and pps

DIOPT Version :9

Sequence 1:NP_731688.2 Gene:MBD-R2 / 41498 FlyBaseID:FBgn0038016 Length:1169 Species:Drosophila melanogaster
Sequence 2:NP_001247075.1 Gene:pps / 41524 FlyBaseID:FBgn0082831 Length:2018 Species:Drosophila melanogaster


Alignment Length:1484 Identity:285/1484 - (19%)
Similarity:486/1484 - (32%) Gaps:476/1484 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 STSRLLEHNGV---TYHSFPLDPIIRAIWIKNSRISLERQITKSVLVCSRHFRRLDFNTIRNGKY 73
            |:|.|...|..   ..:|...|.::::..::...::.:..|.|.|.:.......||         
  Fly   603 SSSELAAENDKQLDLINSIVQDELLKSTLVEQPVVNADEDIPKLVKMLESTAADLD--------- 658

  Fly    74 LLKPRVFPT-VFPWGKMDTAEIEADQRALQHASVEGTTETPGNAQSSTNDDVIKATVDQIVAQIL 137
             ..|...|| :||..:|         :.:.:|:    ...|.|...:.|:|.|.|...|.|..::
  Fly   659 -PPPVSLPTNIFPAPEM---------QGVGNAA----AADPNNIMDTANEDEITADFLQHVVGLI 709

  Fly   138 SESAERKA---------TEEGKTGKAADDVKNTPESGEDAN------------KAAAKEPS---- 177
            .|..:.:|         ||.|    ..|.:.:.|.|.|..:            .|:..||:    
  Fly   710 EEDKQFEAEVVKQVLASTEPG----TLDAIVSMPTSIEPVDVPQVQAHTNLLPNASLTEPAQSMT 770

  Fly   178 ------GTP---VAASSEAT-------------VP-----------------APGSASSS----- 198
                  .||   ||||:..|             :|                 |||.|::|     
  Fly   771 SLPIACSTPSRSVAASTPPTSAKVVRGYGRVIYLPPIEAPTTRAKRRAQFPSAPGMAATSSSDAG 835

  Fly   199 -------------NSPL----------PGTPPKYSNPHNLTIGARLEALSVEGNWLPARIVEVNE 240
                         |.||          ||:.||..||...::..|..|        |.|..:::.
  Fly   836 NLSFGESSLDASINQPLNTSSLSNDSQPGSGPKRPNPREPSMARRSTA--------PRRSKKLDA 892

  Fly   241 TEQTLLVRFERNHKLKVSPSTSGSFQE-------WMAIKSERLRQRLSNRVLPVFELDEKCMARW 298
            ::..             .|..|.|.::       |..     .||..:||.:...:|.|.    |
  Fly   893 SQNN-------------DPDASESQEDDDDPNKLWCI-----CRQPHNNRFMICCDLCED----W 935

  Fly   299 SGPRKFPGT---IRKLLGNDTYEVLFD--------------DGYVKNVRAVHMNKMPKQLPP--- 343
                 |.||   :.|.:|.|......|              ...:.::........|:|.|.   
  Fly   936 -----FHGTCVGVTKAMGTDMENKGIDWKCPKCVKRQEERSQPRITDMLVTRPTTQPEQRPSETK 995

  Fly   344 --------VQVAEEGASKSPTPVGTPVSSAPV------APKRASTGS-------------LGGSS 381
                    ||||...|.:...||...|:|:|:      ..|:..||:             ||.|.
  Fly   996 VLTTTAEIVQVAAPSAPRRTLPVVLTVASSPMRIPMAKPAKKFPTGAISHQQQQQLNFIRLGPSP 1060

  Fly   382 GSSGSKKSKCAPQRRDWPLLDMASLDIASLGLPEIPHDGEWT--CHWVNDQPI----GTEGFL-- 438
            |...| ::.|...:|.      ||......|...|....:..  .|.....|:    |.:..|  
  Fly  1061 GKRIS-ETLCVVCKRP------ASTSSVYCGEECIRKYAQSAIQAHAATKGPLPQNAGAQSLLNN 1118

  Fly   439 -IVGEHQKPTVIVQDWRLPPGWIKHMYQRSNVL----GKWDVILVSPSGKRFRSKSDLKLFLESQ 498
             ...:..|...:.:|.......:..: :|.||.    |:.....::||..:||     |...|:.
  Fly  1119 SFDAKKNKKKDLFEDVLRQADTVSKV-ERINVFERKSGRVITGHMAPSAHQFR-----KWLQENP 1177

  Fly   499 NLVYNPD--VYDFSIHRRRAKDI-NAYVYTH-----GYNPQPPPKPRPMDVSMNSTLDQSITSQH 555
            :....|.  |......:|..|.. .|...|.     |...:||..|..:....|:|:..|  .|.
  Fly  1178 SFEVLPSGTVQSADAEKRLLKGAPEAATSTSEPAVLGVAKKPPEGPAKLSHPQNTTVQAS--HQL 1240

  Fly   556 SLPSTPMPVKESQYMEAPVASLMPPAELMSPQTQPA-----DETKPKIEAEILE--ASEGGTSQL 613
            .:.|.....|:.:....|......|..:.:.:.:|.     ...:.::.|.|.|  |:|..:.|.
  Fly  1241 GISSVRPLAKKDKEKTTPTVQAPTPNRIAAGKPEPVRIGIRRSLREQLLARIKEAQAAEENSGQP 1305

  Fly   614 MLADPHVVENGFAFIGGLKVKIQDNLYVCPREDCAKTYRKEDFLLIHIRH------YHKEFAEHV 672
            ....|.|:|.. .|:..:::::.::.   .|:..||...|...|:.:|:.      :.|..|:.|
  Fly  1306 TTQWPTVLEVD-QFVKNVELEMFNSF---GRDVGAKYKAKYRSLMFNIKDRKNRTLFEKICAKQV 1366

  Fly   673 SHCPKM-----------QELAVKRTHPSSIDQVEAVPKNQIP----NQQFFAKMHQQDLQQSRSF 722
            .  |:.           |||| |.....:..|::.:.|:::.    .|.:..|.|          
  Fly  1367 E--PRQLVRMTPEQLASQELA-KWREEENRHQLDMIKKSELDLLACAQNYVVKTH---------- 1418

  Fly   723 KRQSVSATATSSTPSDITPTKALLSPKMEPPSVSPTVESGIKQEDVSLDAGPTQSFNPSLSRSCK 787
            |.:.|.||..     |:|..:..:|   |..|::.|.::.:..|       |:.|   :|.||..
  Fly  1419 KGEEVIATKV-----DVTLPEENVS---EASSMADTKQTSLVSE-------PSTS---TLERSTS 1465

  Fly   788 RARLSPSK------------RPSGSRKSNRQRS-QRRPILSDNPAG---------HGLTEQDVEE 830
            |.:...||            :.|.||.::|.|| .:|.....|..|         |...|:...|
  Fly  1466 REKAGSSKEKRHKSHKHHHRKRSRSRSNSRGRSVDKRHRRQHNEGGEQPGSGEREHRSREKQSRE 1530

  Fly   831 TRQSFNTPTPDTRIDS-----------KKRRSGAATTPISSIDSPAMGDSVST-----PSSNDQT 879
            ..:...:|.|..|.::           ||..:.|.......::|....:..:.     ||.....
  Fly  1531 RDEIVPSPLPKKRDENDQSPVPKKTAEKKTEASAYNLVDQILESEKTVEQAANLGKPKPSPKPLP 1595

  Fly   880 DINAAL-APPPAETLSKAPQYIKE-------NGELIRIVRMRQEEII------NCICEYGEEDGL 930
            .:.::| ||.|.:..|:   |:..       :|.| :::.:...||:      ||     .:.|.
  Fly  1596 TLPSSLKAPEPMDNYSR---YLHGLTTSSLWSGTL-KMIDLADFEIVMYPVQGNC-----HQLGN 1651

  Fly   931 MIQCELCL--------CWQHGACNGIVKEADVPDKYVCYICRNPQRGRDSMRFKHDQDWLFE--- 984
            ::..::.:        .|::     |.|....|.|.|..:...|....::.:|    |..||   
  Fly  1652 LMPSQMDVIGRITRVNVWEY-----IKKLKKSPTKEVVIVNIFPASPSETYKF----DLFFEYLD 1707

  Fly   985 --------------------------GKLPVAAYHTANPQATKQFELLKRSHTLTGNLLD----- 1018
                                      .||| .|..||.|  ...:|..:|.:||.|.::.     
  Fly  1708 SRQRLGVLGVDSDQIRDFYIFPLGSGDKLP-PALQTAEP--VPFYEEAQRPNTLLGIIVRCLSKR 1769

  Fly  1019 ----------------------AKRSMHSLLVKINIARNRCHPKL--YLWAKKWDEDNLDSTALT 1059
                                  ||||..|:......:..|   |:  :..:.|.||.::|:....
  Fly  1770 PADAVPSTPSVPTPVPALSSKVAKRSRSSISYPAQSSPKR---KISTHSTSSKDDEFDIDAIIKA 1831

  Fly  1060 PVKRAKLEAPDLPNVPQPEAAIDPEE------CQYRLIEHIKVQQSLVLDRLNDIEAEMDELEKE 1118
            |:.:.:..||.:  ||||....|.:|      ....|:....       .|.||:|.:::|:.|:
  Fly  1832 PIAKLQKTAPKV--VPQPSVPNDADEPYSPGGSDDELVPSAP-------QRPNDLERQVNEINKQ 1887

  Fly  1119 DTLDDLKDADI--------STTKEALATFIKELETMKRLAKLNQVANMKQTLRD 1164
            .....::.|.:        :::...||.........|.||.:....|:..:..|
  Fly  1888 IAAQQMEIAGLLKVEPTGSASSSNVLAAISIPANLSKILASIKDKTNLPSSADD 1941

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MBD-R2NP_731688.2 THAP 4..86 CDD:283206 15/77 (19%)
TUDOR 292..329 CDD:119391 9/53 (17%)
MeCP2_MBD 449..522 CDD:238690 15/79 (19%)
PHD_SF 919..963 CDD:304600 9/51 (18%)
ppsNP_001247075.1 TNG2 <827..965 CDD:227367 33/172 (19%)
PHD_PHF3_like 914..963 CDD:277027 15/62 (24%)
BRK 1142..1186 CDD:197800 11/49 (22%)
TFIIS_M 1274..1396 CDD:284835 26/128 (20%)
SPOC 1623..1729 CDD:285043 18/120 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
11.030

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