DRSC/TRiP Functional Genomics Resources

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Protein Alignment MBD-R2 and set3

DIOPT Version :9

Sequence 1:NP_731688.2 Gene:MBD-R2 / 41498 FlyBaseID:FBgn0038016 Length:1169 Species:Drosophila melanogaster
Sequence 2:NP_594837.1 Gene:set3 / 2541899 PomBaseID:SPAC22E12.11c Length:859 Species:Schizosaccharomyces pombe


Alignment Length:266 Identity:56/266 - (21%)
Similarity:86/266 - (32%) Gaps:96/266 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   918 INCICEYGEEDGLMIQCELCLCWQHGACNGIVKEADVPDKYVCYIC------------------- 963
            |.|:|.:.::||..||||.|..|||..|..| ...:||:||.|..|                   
pombe     4 IRCVCPFEDDDGFTIQCESCEVWQHAVCVNI-DANNVPEKYFCEQCQPRPIDADKAHKIQLARLQ 67

  Fly   964 RNPQRGR--DSMRFKHDQDWLFEGKLPVAAYHTANP--------------QATKQFELLKRSHTL 1012
            |..::.|  ...|..:::.....||...:..|:|:|              |:|.........:::
pombe    68 REEEQSRILSRSRSSNNKRRTSFGKNGASPTHSASPRQGNNTGANGALFSQSTNSSNSGSYRNSV 132

  Fly  1013 TGNLLDAKRSMHSL-----------------------------LVKINIARNRCHPKLYLWAKKW 1048
            ||..|....:.||.                             |..:.:..|........::|..
pombe   133 TGATLPNAHAPHSQNRRRRSNHLNNPPEAPITEASNEYVYSFHLEYVPLESNTFSASALEYSKNL 197

  Fly  1049 DEDNLDST-------ALTPVKRAKL-----------EAPDLPNVP----------QPEAAIDPEE 1085
            |..|||.:       .:.|:..:|.           |.|  ||.|          |.|...||:.
pombe   198 DLKNLDESEVLMDGCQVVPISSSKFCCSRFGLVSTCEIP--PNTPIMEVKGRVCTQNEYKSDPKN 260

  Fly  1086 CQYRLI 1091
             ||.::
pombe   261 -QYNIL 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MBD-R2NP_731688.2 THAP 4..86 CDD:283206
TUDOR 292..329 CDD:119391
MeCP2_MBD 449..522 CDD:238690
PHD_SF 919..963 CDD:304600 19/43 (44%)
set3NP_594837.1 PHD_MLL5 5..48 CDD:277025 19/43 (44%)
SET 215..343 CDD:214614 13/54 (24%)
SET 284..826 CDD:225491
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1844
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001785
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.930

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