DRSC/TRiP Functional Genomics Resources

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Protein Alignment MBD-R2 and Nsd3

DIOPT Version :9

Sequence 1:NP_731688.2 Gene:MBD-R2 / 41498 FlyBaseID:FBgn0038016 Length:1169 Species:Drosophila melanogaster
Sequence 2:NP_001074738.1 Gene:Nsd3 / 234135 MGIID:2142581 Length:1446 Species:Mus musculus


Alignment Length:571 Identity:109/571 - (19%)
Similarity:181/571 - (31%) Gaps:173/571 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   652 RKEDFLLIHIRHYHKEFAEHVSHCPKMQELAVKRTHPSSI--DQVEAVPKNQIPNQQFFAKMHQQ 714
            |.|.:..|:|....:|.:.........:....|...|.|:  .|.|.....::.:.|....:.:|
Mouse   396 RVEQYTFIYIDKQPEEASSQAKKNVTSKTEVKKPRRPRSVLNSQPEQTNAGEVASSQSSTDLRRQ 460

  Fly   715 DLQQSRSFKRQS--------VSATATSSTPSDITPTKALLSPKMEPPSVSPTV------------ 759
            ..::..|.:.:.        .:|.|..|.|:.||..|..|.  ::..::||.|            
Mouse   461 SQRRHTSLEEEEPPPVKIAWKTAAARKSLPASITMHKGSLD--LQKCNMSPVVKIEQVFALQNAT 523

  Fly   760 --------------------ESGIKQEDVSLDAGPTQ-SFNPSLSRSCKRARLSPSKRPSGSRKS 803
                                |..::.:|..:.:.|:| |..|:.|.|...|       .|||...
Mouse   524 GDGKFIDQFVYSTKGIGNKTEISVRGQDRLIISSPSQRSEKPAQSASSPEA-------TSGSAGP 581

  Fly   804 NRQRSQRRPILSDNPAGHG--------LTEQDVEETRQ-SFNTPTPD--TRIDSK----KRRSGA 853
            ..::.|||.|.:.:.:...        :.::.||...| |..|....  :.|...    |:||.|
Mouse   582 VEKKQQRRSIRTRSESEKSAEVVPKKKIKKEQVETAPQASLKTGLQKGASEISDSCKPLKKRSRA 646

  Fly   854 AT-------TPISSIDSPAMGDSVSTPSSNDQTDINAALAPPPAETLSKAPQYIKENGELIRIVR 911
            :|       |...:.||.:.|.|........|.|..:|.|...|.........:...|     |.
Mouse   647 STDVETASCTYRDTSDSDSRGLSDGQVGFGKQVDSPSATADADASDAQSVDSSLSRRG-----VG 706

  Fly   912 MRQEEIINCICEYGEEDGLMIQCE-LCLCWQHGACNGIVKEADVPD-KYVCYICRNPQR------ 968
            ..:::.:..:||  :....::.|| .|....|..|.|:..   ||: .:.|..|...|.      
Mouse   707 TSKKDTVCQVCE--KAGDCLVACEGECCRHFHVECLGLTA---VPEGHFTCEECETGQHPCFSCK 766

  Fly   969 --GRDSMR--------FKHD------QDWLFEGK------------------------------- 986
              |:|..|        |.|:      ...:||.|                               
Mouse   767 VSGKDVKRCSVSVCGKFYHEACVRKFPTAIFESKGFRCPQHCCSSCSMEKDIHKASKGRMMRCLR 831

  Fly   987 LPVAAYH------TANPQATKQFELLKRSHTLTGNLLDAKRSMHSLLVKIN---------IARNR 1036
            .|| |||      .|...:.....|:..:|        :|||..|..:.:.         |.::.
Mouse   832 CPV-AYHVGDACVAAGSVSVSSHILICSNH--------SKRSSQSAAINVGFCFVCARGLIVQDH 887

  Fly  1037 CHPKLYLWAKKWDEDNLDSTALTPVKRAKLEAPDLPNVPQPEAAIDPEECQ 1087
            ..|....:|.|      ....|:...||:|  ..||.:|...|:  .:.|:
Mouse   888 SDPMFSSYAYK------SHYLLSESNRAEL--MKLPMIPSSSAS--KKRCE 928

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MBD-R2NP_731688.2 THAP 4..86 CDD:283206
TUDOR 292..329 CDD:119391
MeCP2_MBD 449..522 CDD:238690
PHD_SF 919..963 CDD:304600 11/45 (24%)
Nsd3NP_001074738.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 191..257
MSH6_like 277..393 CDD:99898
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 354..377
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 411..476 9/64 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 550..705 37/166 (22%)
PHD_SF 713..755 CDD:304600 11/46 (24%)
PHD2_NSD3 761..807 CDD:277122 8/45 (18%)
PHD_SF 808..860 CDD:304600 7/52 (13%)
PHD4_NSD3 927..962 CDD:277128 1/2 (50%)
WHSC1_related 968..1061 CDD:99899
AWS 1104..1154 CDD:197795
SET 1155..1278 CDD:214614
PHD5_NSD3 1332..1374 CDD:277131
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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