DRSC/TRiP Functional Genomics Resources

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Protein Alignment MBD-R2 and Phf20

DIOPT Version :10

Sequence 1:NP_731688.2 Gene:MBD-R2 / 41498 FlyBaseID:FBgn0038016 Length:1169 Species:Drosophila melanogaster
Sequence 2:NP_766262.2 Gene:Phf20 / 228829 MGIID:2444148 Length:1010 Species:Mus musculus


Alignment Length:1176 Identity:246/1176 - (20%)
Similarity:395/1176 - (33%) Gaps:421/1176 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 IGARLEALSVEGNWLPARIVEVNETEQTLLVRFER-NHKLKVSPSTSGSFQEWMAIKSERLR--Q 278
            :||:|||.....||.||.|.:::..|..:|:.|:| ||:          :.||....|..||  :
Mouse    15 VGAQLEARDRLKNWYPAHIEDIDYEEGRVLIHFKRWNHR----------YDEWFCWDSPYLRPLE 69

  Fly   279 RLSNRVLPV--------FELDEKCMARWSGPRKFPGTIRKLLGNDTYEVLFDDGYVKNVRAVHMN 335
            ::..|...:        |:::::.:|.||..|.:|..:..:..:.||.|.|.||.|:.|:.:|: 
Mouse    70 KIQLRKEGLHDEDGSSEFQINQQVLACWSDCRFYPARVTAVNKDGTYTVKFYDGVVQTVKHIHV- 133

  Fly   336 KMPKQLPPVQVAEEGASKSPTPVGTPVSSAPVAPKRASTGSLGGSSGSSGSKKSKCAPQRRDWPL 400
                         :..||....||.      ..||.....||    .||..|:.|...||:....
Mouse   134 -------------KAFSKDQNIVGN------ARPKETDHKSL----SSSPEKREKFKEQRKVTVN 175

  Fly   401 LDMASLDIASLGLPEIPHDGEWTCHWVNDQPIGTEGFLIVGEHQKPTVIVQDWRLPPGWIKHMYQ 465
            :....::.| |...:.|           .|| ..||.||..|..|    |.:..||.   .....
Mouse   176 VKKDKVEKA-LKTEKRP-----------KQP-DKEGKLICSEKGK----VSEKSLPK---NEKED 220

  Fly   466 RSNV---------------LGKWDVI------LVSPSGKRFRSKSDLKLFLESQNLVYNPDVYDF 509
            :.|:               ..:.|::      |..|..||.|..|.....::|.:....|    .
Mouse   221 KENISENEREYSGDAQVEKKPEKDLVKNPQENLKEPKRKRGRPPSITPTAVDSNSQTLQP----I 281

  Fly   510 SIHRRRAK--------------DINAYVYTHGYNPQPPPKPRPMD------------VSMNST-- 546
            ::..||.|              |.|        :||...|.|..:            :|.|.|  
Mouse   282 TLELRRRKISKRSDTPLKRPRLDKN--------SPQEQSKKRSENSDKDLSRRRSSRLSTNGTRE 338

  Fly   547 -LD-QSITSQ--HSLPSTPMPVKESQYMEAPVASLMPPAEL------------------------ 583
             || .||...  |::.:.|:|.|.....::....|..|.|.                        
Mouse   339 ILDPDSIVPDLVHTVDTNPLPDKSPSAKDSAEGQLKSPLEAGQVSSALTCHPIGDGLGAADLELN 403

  Fly   584 ---MSPQTQPADETKPKIEAEILEASEGGTSQLMLADPHVVENGFAFIGGLKVKIQDNLYVCPRE 645
               |...|...:...|..|.:.:...| ..:.|...|..|..|       :.....|:.:.|...
Mouse   404 CKSMGENTMKTEPVSPLAEVQEVSTVE-VPNTLKKVDDSVTLN-------VPAVDLDHKFRCKVL 460

  Fly   646 DCAKTYRKEDFLLIHIRHYHKEFAEHVSHCPKMQELAVKRTHPSSIDQVEAVPKNQIPNQQFFAK 710
            ||.|.:||...|     |||.::...:...|:.:| ...:||..:  :..|||            
Mouse   461 DCLKFFRKAKLL-----HYHMKYFHGMEKSPEPEE-GPGKTHVQT--RGSAVP------------ 505

  Fly   711 MHQQDLQQSRSFKRQSVSATATSSTPSDITPTKAL-----LSPKMEPPSVSPTVESGIKQEDV-- 768
                |.....|..|:.|||::.::...:.|..|..     :.||.:......|.......||:  
Mouse   506 ----DKTSQESLTRKRVSASSPTAKEKEKTKEKKFKELVRVKPKKKKKKKKKTKPECPCSEDISD 566

  Fly   769 -SLDAGPTQSFNPSLSRSCKRARLSPSKRPSGSRKSNR-------------QRSQRRPILSDNPA 819
             |.:..|.::|..:...|..:..:..|.:..||...|.             :.|....:.||...
Mouse   567 TSQEPSPPKTFAVTRCGSSHKPGVHMSPQLHGSDNGNHKGKLKTCEEDNLSESSSESFLWSDEEY 631

  Fly   820 GHGLTEQDVEETRQSFNTPTPDTRIDSKKRRSGAATTPISSIDSPAMGDSVSTPSSNDQTDINAA 884
            |     |||:.      |..||..::                     ||        |:.|.   
Mouse   632 G-----QDVDV------TTNPDEELE---------------------GD--------DRYDF--- 653

  Fly   885 LAPPPAETLSKAPQYIKENGELIRIVRMRQEEIINCICEYGEEDGLMIQCELCLCWQHGACNGIV 949
                                           |::.||||..||:..|||||.|.|||||.|.|::
Mouse   654 -------------------------------EVVRCICEVQEENDFMIQCEECQCWQHGVCMGLL 687

  Fly   950 KEADVPDKYVCYICRNPQRGRDSMRFKHDQDWLFEGKLPVAAYHTANPQATKQFELLKRSHTLTG 1014
            :| :||:||.||:|::|...|...::.:|::||..|.:...|:...| .:.:....:..:|.|.|
Mouse   688 EE-NVPEKYTCYVCQDPPGQRPGFKYWYDKEWLSRGHMHGLAFLDQN-YSHQNARKIVATHQLLG 750

  Fly  1015 NLLDAKRSMHSLLVKINIARNRCHPKLYLWAKKWDEDN--------------------------- 1052
            ::....:.:|.|.:|::|.::|.||.|.||.:.|.:.:                           
Mouse   751 DVQRVIQVLHGLQLKMSILQSREHPDLQLWCQPWKQHSGEGRAHPRHIHITDARSEESPSYRTLN 815

  Fly  1053 ----------------------------------------------LDSTALTPV---------- 1061
                                                          ||: |::|:          
Mouse   816 GAVEKPSPLPRSVEESYITSEHCYQKPRAYYPAVEQRLVVETRGSALDA-AVSPLCENGDDSLSP 879

  Fly  1062 --------KRAKLEAPDLPNVPQPEAAID----PEEC--------------------QYRLIEHI 1094
                    .|::.:....|:.|:....|.    |||.                    |:.|:.|:
Mouse   880 RLGWPIDQDRSRGDIDPKPSSPKVREYISKNVLPEETPARKLLDRGGEGLVSSQHQWQFNLLTHV 944

  Fly  1095 KVQQSLVLDRLNDIEAEMDELEKEDTLDDLKDADISTTKEALATFIKELETMKRLAKLNQVAN-M 1158
            :..|..|..|::.||.|:|.|  |..||                :..|||..:.||:|.|:.: :
Mouse   945 ESLQDEVTHRMDSIEKELDVL--ESWLD----------------YTGELEPPEPLARLPQLKHCI 991

  Fly  1159 KQTLRD 1164
            ||.|.|
Mouse   992 KQLLTD 997

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MBD-R2NP_731688.2 THAP 5..84 CDD:461662
MBT_PHF20L1-like 215..282 CDD:439094 21/67 (31%)
Tudor_PHF20-like 288..337 CDD:410457 15/48 (31%)
MeCP2_MBD 449..522 CDD:238690 18/107 (17%)
PHD_SF 919..963 CDD:473978 26/43 (60%)
PRK04778 <1099..>1153 CDD:179877 15/53 (28%)
Phf20NP_766262.2 MBT_PHF20L1-like 13..69 CDD:439094 21/63 (33%)
Tudor_PHF20 87..139 CDD:410524 16/65 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 142..373 56/272 (21%)
DUF3776 176..280 CDD:463645 23/123 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 483..609 28/144 (19%)
PHD_SF 657..700 CDD:473978 26/43 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 804..827 0/22 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 877..902 2/24 (8%)
Blue background indicates that the domain is not in the aligned region.

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