DRSC/TRiP Functional Genomics Resources

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Protein Alignment MBD-R2 and C16A11.4

DIOPT Version :9

Sequence 1:NP_731688.2 Gene:MBD-R2 / 41498 FlyBaseID:FBgn0038016 Length:1169 Species:Drosophila melanogaster
Sequence 2:NP_494744.2 Gene:C16A11.4 / 173755 WormBaseID:WBGene00015817 Length:527 Species:Caenorhabditis elegans


Alignment Length:141 Identity:30/141 - (21%)
Similarity:52/141 - (36%) Gaps:28/141 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   876 NDQTDINAALAPPPAETLSKAPQYIKENGELIRIVRMRQEEIINCICEYGEEDGLMIQCELCLCW 940
            :|.::......||||         |:::...:..:...|:| :.|.|.....|..:|:|..|..|
 Worm     2 DDSSEEANQFEPPPA---------IRKSTRAVNNLSPHQKE-VRCQCGTNNTDNRLIKCVECEKW 56

  Fly   941 QHGACNGIVKEADVPDKYVCYICRNPQRGRDSMRFKHDQDWLFEGKLPVAAYHTANPQATKQFEL 1005
            ||..|..:: ..|:...|.|.:|              :...|...:....||....|:..   |:
 Worm    57 QHAICMSVM-PLDIIMTYKCEMC--------------EPRLLMVSRSQARAYQGVEPEPR---EV 103

  Fly  1006 LKRSHTLTGNL 1016
            .|:....:.||
 Worm   104 RKKGRNQSVNL 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MBD-R2NP_731688.2 THAP 4..86 CDD:283206
TUDOR 292..329 CDD:119391
MeCP2_MBD 449..522 CDD:238690
PHD_SF 919..963 CDD:304600 13/43 (30%)
C16A11.4NP_494744.2 PHD_SF 35..78 CDD:389947 13/43 (30%)
SPK 117..221 CDD:367941
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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