DRSC/TRiP Functional Genomics Resources

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Protein Alignment MBD-R2 and phf20l1

DIOPT Version :9

Sequence 1:NP_731688.2 Gene:MBD-R2 / 41498 FlyBaseID:FBgn0038016 Length:1169 Species:Drosophila melanogaster
Sequence 2:XP_012820619.2 Gene:phf20l1 / 100145157 XenbaseID:XB-GENE-5799581 Length:1041 Species:Xenopus tropicalis


Alignment Length:1207 Identity:255/1207 - (21%)
Similarity:426/1207 - (35%) Gaps:372/1207 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 KTGKAADDVKNTPESGEDANKAAAKEPSGTPVAASSEATVPAPGSASSSNSPLPGTPPKYSNPHN 214
            :.|:|..|.....|.|....:.:.|.||                        .||.        .
 Frog     2 QAGEAGKDRPEKTEGGGGEARMSKKAPS------------------------RPGI--------T 34

  Fly   215 LTIGARLEALSVEGNWLPARIVEVNETEQTLLVRFERNHKLKVSPSTSGSFQEWMAIKSERLR-- 277
            ..:||||||......|.|::|.:::..|:.||:.|||         .|..:.||:..:|.|||  
 Frog    35 FEVGARLEAQDYLQKWYPSKIEKIDFEEEKLLIHFER---------WSSRYDEWIHWESSRLRPL 90

  Fly   278 QRLSNRVLPV--------FELDEKCMARWSGPRKFPGTIRKLLGNDTYEVLFDDGYVKNVRAVHM 334
            ::.|.|...:        |:..|:.:|||:..|.:|..|..:....||.|.|.||.::.::.:|:
 Frog    91 EKPSLRKEGIRDDEENYDFKEGEEVLARWTDCRYYPAKIEAINKEGTYTVQFYDGVIRCLKKMHI 155

  Fly   335 NKMPKQLPPVQVAEEGASKSPTPVGTPVSSAPVAPKRASTGSLGGSSGSS-GSKKSKCAPQRRDW 398
            ..||:.           :|....:....::|.||.|..|    |....:| .|.|.|   :.|.|
 Frog   156 KYMPED-----------AKGQDWIALVKAAAAVAAKNKS----GNKPRTSINSNKDK---EERKW 202

  Fly   399 ---------PLLDMASLDIASLGLPEIPHDGEWTCHWVNDQPIGTEGFLIVGEHQKPTVIVQDWR 454
                     |:|..|      ||:.:..          .::|..:.. |.|...:.|.:.:|.  
 Frog   203 GKGLSKKEEPVLCKA------LGIFQKE----------EEEPTSSRN-LDVAFSETPKICIQP-- 248

  Fly   455 LPPGWIKHMYQRSNVLGKWDVILVSPSGKRFRSKSDLKLFLESQNLVYNPDVYDFSIHRRRAKDI 519
             ||                |.:|:    ||..|::.                 .|...|.|...|
 Frog   249 -PP----------------DELLL----KRKLSQTS-----------------SFQAKRARLNKI 275

  Fly   520 NAYVYTHGYN-PQPPPKPRPMDVSMNSTLDQSITSQHSLPSTPMPVKESQ-YMEAPVASLMP--- 579
            ...:.:...: .....|.|..:.:  |.|:::|        :|.|.|::: .:..|.::|.|   
 Frog   276 TGLLASKAVSLDDAEKKDRVSEKA--SRLEEAI--------SPKPQKQNEGDISHPCSTLKPTLL 330

  Fly   580 PAELMSPQTQPADETKPKIEAE----------ILEASEGGTSQLMLAD---------PHVVENGF 625
            ||.|.|.:.:...:.:...:|.          :.:.::|..:.:.||.         |....|..
 Frog   331 PAALSSGKARNRKDKRDLGDASGCKKIPMSPIVPDLTQGSAAPVSLAKSLGRKNRRRPQRSSNPL 395

  Fly   626 -------AFIGGLKVK----IQDNLYVCP-RED-CAKTYRKEDFLLIHIRHYHKEFAEHVSH--- 674
                   :||.|..::    .|..|.|.. |.| |....:.|...|       ...||..:.   
 Frog   396 SEDFPCPSFIQGKGLQRGPHTQQGLSVATVRSDACVPPEKSEPLDL-------SRSAEPTAPLLP 453

  Fly   675 -------CPKMQELAVKR---------------THPSSIDQVEAVPKNQIPNQQFFAKMHQQDLQ 717
                   ||..::..::.               ..|:|...:.|: |:.:||....||.:::...
 Frog   454 ESSVRVICPSKEKENIQSISCSSKAVADSSGAPASPASSPHIHAL-KSALPNSVKPAKGNRKKKS 517

  Fly   718 QSRSFKRQSVSATATSSTPSDITPTKALLSPKMEPPSVSPTVESGIKQEDVSLDAGPTQSFNPSL 782
            .:.....:.:.|..|...|:::.........:.:...|....|..:|.|:.....|..:  :...
 Frog   518 SASEGTEKPLPAGGTDKAPNNVQEKVTKKGNEDKHSDVGVVKEKKVKIEEKMTSVGKKK--DKDK 580

  Fly   783 SRSCKRARLSPSKRPSGSRKSNRQRSQRRPILSDNPAGHGLTEQDVEETRQSF--NTPTPDTRID 845
            .|..|:.: ..||.....:|..:::|::...|            |.||....|  .|.:|.|...
 Frog   581 DRKEKKEK-DHSKSKQKKKKKKKKKSKQHEYL------------DFEEASMDFQDRTSSPVTLTS 632

  Fly   846 S----------KKRRSGAATTPISSIDSPAMGDSVSTPSSNDQTDINAALAPPPAETLSKAPQYI 900
            |          .|..|......|.|:|  ..|:::|.....|.:...:.:.        ...:|.
 Frog   633 SGTLSLRNTLTVKNNSFQFPRAILSVD--LTGENLSDMEFLDDSSTESLIL--------SGDEYN 687

  Fly   901 KE----NGELIRIVRMRQEEIINCICEYGEEDGLMIQCELCLCWQHGACNGIVKEADVPDKYVCY 961
            :|    |.|..:.......||:.|:||..||:|.|||||.||||||.||.|:::|: :|::||||
 Frog   688 QEFDSANFEESQDEEEAANEIVRCVCEIDEENGFMIQCEECLCWQHSACMGLLEES-IPEQYVCY 751

  Fly   962 ICRNPQRGRDSMRFKHDQDWLFEGKLPVAAYHTANPQATKQFELLKRSHTLTGNLLDAKRSMHSL 1026
            ||.:|...|.|.::::|:||..:|.|...::...|.......:::. :|.|..::.:....|:.|
 Frog   752 ICSDPPGQRWSAKYRYDKDWFNKGHLCGLSFVNENYSYLNAKKIVS-THHLVADIFNITEIMYGL 815

  Fly  1027 LVKINIARNRCHPKLYLWA-----KKWDEDN---------LDSTAL------TPVKRAKLEAPDL 1071
            .:|..|.:|:.||.|.|||     |:..|.|         ||.|..      :|.:..|.:...:
 Frog   816 QLKFGILKNKDHPDLRLWACPGKQKECGETNEKRTFCINQLDRTTCGQNHVGSPSELWKSDETYI 880

  Fly  1072 P---------------NVPQPEAAIDPE------------------------------------- 1084
            .               |||...|..:.|                                     
 Frog   881 TSEHSYQKPLGGNLACNVPTGPAGCNEEAGAGLANEKREILGDTKTCLQGSLRTERRNEQNVLEE 945

  Fly  1085 --------------------ECQYRLIEHIKVQQSLVLDRLNDIEAEMDELEKE-DTLDDLKDAD 1128
                                :.|..|:.||:.:|       |::.:.||.:||| |.|:...|  
 Frog   946 NKVAVSYERKGMEEQVDSHLQWQLNLLAHIENEQ-------NEVSSRMDLIEKEVDVLESWLD-- 1001

  Fly  1129 ISTTKEALATFIKELETMKRLAKLNQV-ANMKQTLRD 1164
                      |..|||....|.:|.|: ..|||.|.|
 Frog  1002 ----------FTGELEPPDPLGRLPQLKRRMKQLLMD 1028

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MBD-R2NP_731688.2 THAP 4..86 CDD:283206
TUDOR 292..329 CDD:119391 13/36 (36%)
MeCP2_MBD 449..522 CDD:238690 12/72 (17%)
PHD_SF 919..963 CDD:304600 26/43 (60%)
phf20l1XP_012820619.2 MBT 12..90 CDD:418456 29/118 (25%)
Tudor_PHF20L1 108..166 CDD:410525 18/68 (26%)
PHD20L1_u1 311..368 CDD:374703 9/56 (16%)
PHA03247 <358..503 CDD:223021 24/152 (16%)
PHD_PHF20L1 710..755 CDD:277103 28/45 (62%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 147 1.000 Domainoid score I4477
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 183 1.000 Inparanoid score I3838
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D147824at2759
OrthoFinder 1 1.000 - - FOG0001785
OrthoInspector 1 1.000 - - otm47941
Panther 1 1.100 - - O PTHR15856
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 1 1.000 - - X2262
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.190

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