DRSC/TRiP Functional Genomics Resources

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Protein Alignment MBD-R2 and nsd3

DIOPT Version :9

Sequence 1:NP_731688.2 Gene:MBD-R2 / 41498 FlyBaseID:FBgn0038016 Length:1169 Species:Drosophila melanogaster
Sequence 2:XP_005155379.1 Gene:nsd3 / 100006350 ZFINID:ZDB-GENE-050324-2 Length:1563 Species:Danio rerio


Alignment Length:813 Identity:140/813 - (17%)
Similarity:245/813 - (30%) Gaps:310/813 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   520 NAYVYTHGYNPQPPPKPRPMDVSMNSTLDQSITSQHSLPSTPMPVKESQYMEAPVASLMPPA-EL 583
            |..:..|.::..|||                  :.|.:|         |.:..|...|:|.: .|
Zfish   160 NPPLLPHHHHHHPPP------------------ASHLMP---------QVLPPPPPLLLPSSPPL 197

  Fly   584 MSPQ-----------------TQPADETKPKIEAEILEASEGGTSQLMLADPHVVENGFAFIGGL 631
            :|||                 |.|...:.|:|:.:|::..:.|.        .:.|:  :..|.|
Zfish   198 LSPQESTISNPIGQPVNTIITTTPKKTSSPEIKLKIIKTYQNGR--------ELFES--SLCGDL 252

  Fly   632 KVKIQDNLYVCPREDCAKTYRKEDFLLIHIRHYHKEFAEHVSHCPKMQELAVKRTHPSSIDQVEA 696
            ..:.|..      ||..:.:.::.      ....|..:.|.:...:.|:       ||.:::..:
Zfish   253 LQEFQAG------EDSRRQHEQKK------EKRKKRGSRHGAGHEESQQ-------PSKVEEERS 298

  Fly   697 V----PKNQIPNQQFFAKMHQQDLQQSRSFKRQSVSATATSSTPSDITPTKALLSPKMEPPSVSP 757
            |    |.....:|..|    :::.|...|.|                :|...|...|:|....|.
Zfish   299 VVVHNPVQTTESQVAF----REEQQPQSSLK----------------SPKAELKEQKVEKHCPSV 343

  Fly   758 TVESGIKQE-----------------DVSLDAGPTQSFNPSL-SRSCK------------RA--- 789
            ...:|..||                 ...:.:.|..:.:..: :|.||            ||   
Zfish   344 ITSTGTSQEYEIGDLVWAKVGTYPWWPCMVSSDPQSNVHTRINTRGCKEYHVQFFGSVPERAWIH 408

  Fly   790 -------------------RLSPSKRPSGSRKSNRQRSQRRPILSDNPAGHGLTEQDVEETRQSF 835
                               .|..|..|:..:|..:.:||:.....:...||  .|..::.||:..
Zfish   409 EKRTVVYKSENQFDELQAETLRKSTNPTEKQKLLKPQSQKERAQWEVGVGH--AEAALQMTREER 471

  Fly   836 N----------------------TPTPDT------------------RIDSKKRRS----GAATT 856
            |                      .|.||:                  |.:.|:|||    ||...
Zfish   472 NENYTFIYIDKEPGADAETAAAPAPAPDSAPTAPTDTVTSPKATAKNRPERKQRRSRGSAGAKEE 536

  Fly   857 PISSIDSP-------AMGDSVSTPSSNDQTDINAALAPP--------PAETLSKAPQYIKENGEL 906
            ||.....|       ::|::.|.....|..:.....:||        |:....:.|.......:|
Zfish   537 PIPRRQQPRRQCSMNSVGETSSPNQGEDAMEQEQPCSPPKPAPRPKEPSPPPVRTPWRTAAARKL 601

  Fly   907 IRI-VRMRQ--EEIINCICEYGEEDGLMIQCELCLCWQHGACNGIVKEADVPDKYVCYICRNPQR 968
            :.: :.|::  .|||.|                  .||            :|.:.|....:....
Zfish   602 LPLSITMKKLNVEIIKC------------------DWQ------------LPKQKVELPKKTESE 636

  Fly   969 GRDSMRFKHDQDWLFEGKLPVAAYHT--------ANPQATKQFELLKRSHTLTGNLLDAKRSMHS 1025
            .|.|.|.|..     ||....|...|        |:|......|     ||......:.|:...|
Zfish   637 ERPSSRVKSP-----EGSSNKAEAETCSSEEERAASPSGWSDQE-----HTSAEQSTERKQQRRS 691

  Fly  1026 LLVKINIARNRCHPKLYLWAKKWDEDNLDSTALTPVKRAKLE-AP--DLPNVPQPEAAIDPEEC- 1086
            :       |:|..          .|.:::......||:.:.| ||  |.....|..|:...:.| 
Zfish   692 V-------RSRSE----------SEKSVEPVPKKKVKKEQAETAPQMDFKTGSQKGASEISDSCK 739

  Fly  1087 ----QYRLIEHIKVQQSLVLDR-------LNDIEAEMDE-LEKEDTLD----DLKDADISTTKEA 1135
                :.|....:::..||..|.       |||.:....: .:...|:|    |.:..|.|.:::.
Zfish   740 PLKKRSRASTDVEMASSLYRDTSDSDSRGLNDPQTGFGKRSDSPATVDADGSDAQSVDSSLSRQG 804

  Fly  1136 LATFIKELETMKRLAKLNQVANMKQTLRDSATS 1168
            .::           :|.:.|.::.:|..||..|
Zfish   805 GSS-----------SKKDTVCHVCETFGDSLVS 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MBD-R2NP_731688.2 THAP 4..86 CDD:283206
TUDOR 292..329 CDD:119391
MeCP2_MBD 449..522 CDD:238690 1/1 (100%)
PHD_SF 919..963 CDD:304600 5/43 (12%)
nsd3XP_005155379.1 PWWP 351..468 CDD:321985 17/118 (14%)
PHD1_NSD3 813..856 CDD:277119 5/14 (36%)
PHD_SF 861..907 CDD:328929
PHD3_NSD3 908..960 CDD:277125
PHD4_NSD3 1033..1066 CDD:277128
WHSC1_related 1072..1165 CDD:99899
AWS 1208..1258 CDD:197795
SET 1259..1382 CDD:214614
PHD5_NSD3 1437..1479 CDD:277131
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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