Protein Alignment svp and rxrg

DIOPT Version :10

• Sequence 1: NP_001369011.1
• Gene: svp / 41491
• FlyBaseID: FBgn0003651
• Length: 826
• Species: Drosophila melanogaster
• Sequence 2: XP_004913829.2
• Gene: rxrg / 779621
• XenbaseID: XB-GENE-478493
• Length: 535
• Species: Xenopus tropicalis
• Alignment Length: 496
• Identity: 175/496 - (35%)
• Similarity: 261/496 - (52%)
• Gaps: 60/496 - (12%)

  Fly    53 HLHAASAGPGTTTGS-----VATGGGGTT---PSSVASQQSAVIKQDLSCPSLNQAGSGHHPGIK 109
            |.|:.|....:...:     |.||..|.:   |.|:.:..:::      |...|..|..:..
 Frog    88 HAHSTSVSSSSNLAAMNSLDVHTGYMGNSMNGPRSMTTNMNSL------CSPGNNIGPPYRV--- 143

  Fly   110 EDLSSSLPSANGGSAGGHHSGSGSGSGSGVN-PGHGSDMLPLIKGHGQDMLTSIKGQPTGCGSTT 173
              ::||:         |.||   ..|.:.:| |||.|....|:  :.......||..|   |.:.
 Frog   144 --IASSM---------GPHS---LPSPTILNFPGHESPPFNLM--NNISCSEDIKPPP---GLSN 189

  Fly   174 PSSQANSSHSQSSNSGSQIDSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRG 238
            ..|...:::  |.||...:  .::| |.:|||:|||||||.::|||||.||||::|::|.|:||.
 Frog   190 LGSPCMNNY--SCNSPGAL--TKHI-CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRD 249

  Fly   239 SRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIANGDPMGIAGFN 303
            :::|.||:..||:|||||.:|||.|||:|||||..|....:.  :....:...:..:.|.:
 Frog   250 TKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSREK--SDTEAESTSSTSEEMPV---- 308

  Fly   304 GHSYLSSYISLLLRAEPYPTSRYGQCMQPNNIMG-IDNICELAARLLFSAVEWAKNIPFFPELQV 367
                 ...:...|..|| ....:|....||:... :.|||..|.:.||:.|||||.||.|.:|.:
 Frog   309 -----ERILEAELAVEP-KIEAFGDAGLPNSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLPL 367

  Fly   368 TDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADR--VVAFMDHIRIFQEQVEK 430
            .|||.|||..|:||.:.:.|..|:.:... :|.|.|||....:|..  |.:..|  |:..|.|.|
 Frog   368 EDQVILLRAGWNELLIASFSHRSVSVQDG-ILLATGLHVHRSSAHNAGVGSIFD--RVLTELVSK 429

  Fly   431 LKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLR 495
            :|.:.:|.:|..||:|||||..||.|||:...:|:|:||....||.|.:.:||.||.||.|||||
 Frog   430 MKDMEMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYATLESYTKQKYPEQPGRFAKLLLR 494

  Fly   496 LPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLSGNSFS 536
            ||:||::..:.:|.|||.:|:|.|||:|.:.:||.:.:..|
 Frog   495 LPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLETPHQIS 535

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
svp	NP_001369011.1	NR_DBD_COUP_TF	200..272	CDD:143516	45/71 (63%)
		NR_LBD_COUP-TF	307..542	CDD:132746	94/233 (40%)
rxrg	XP_004913829.2	Nuc_recep-AF1	99..206	CDD:463363	29/136 (21%)
		NR_DBD_RXR	209..285	CDD:143514	47/76 (62%)
		NR_LBD_RXR_like	305..513	CDD:132741	86/220 (39%)