DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment svp and RXRG

DIOPT Version :9

Sequence 1:NP_001369011.1 Gene:svp / 41491 FlyBaseID:FBgn0003651 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_008848.1 Gene:RXRG / 6258 HGNCID:10479 Length:463 Species:Homo sapiens


Alignment Length:464 Identity:169/464 - (36%)
Similarity:240/464 - (51%) Gaps:70/464 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 PSANGGSAGGHHSGSGSGSGS-GVNPGHGSDMLPLIK--------------------GHGQDMLT 160
            |:..|||.|  |:||.|.|.| .::.|...|..|...                    |....::|
Human    12 PAGYGGSPG--HTGSTSMSPSAALSTGKPMDSHPSYTDTPVSAPRTLSAVGTPLNALGSPYRVIT 74

  Fly   161 SIKGQPTGCGSTTPSSQANSSHSQSSNSGSQIDSKQNIE-------------------------C 200
            |..|.|:|..:..|.....:..|...|..:.:.|.::|:                         |
Human    75 SAMGPPSGALAAPPGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHIC 139

  Fly   201 VVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGM 265
            .:|||:|||||||.::|||||.||||::|::|.|:||.:::|.||:..||:|||||.:|||.|||
Human   140 AICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGM 204

  Fly   266 RREAVQRGRVPPTQPGLAGMHGQYQIANGDPMGIAGFNGHSYL--SSYISLLLRAEPYPTSRYGQ 328
            :|||||..|             |......:.......:||..:  ...:...|..|| .|..||.
Human   205 KREAVQEER-------------QRSRERAESEAECATSGHEDMPVERILEAELAVEP-KTESYGD 255

  Fly   329 CMQPNNIMG-IDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMP 392
            ....|:... :.|||..|.:.||:.|||||.||.|.:|.:.|||.|||..|:||.:.:.|..|:.
Human   256 MNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVS 320

  Fly   393 LHVAPLLAAAGLHASPMAADR--VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDAC 455
            :... :|.|.|||....:|..  |.:..|  |:..|.|.|:|.:.:|.:|..||:|||||..||.
Human   321 VQDG-ILLATGLHVHRSSAHSAGVGSIFD--RVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAK 382

  Fly   456 GLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTP 520
            |||:.:.:|:|:||....||.|.:.:||.||.||.|||||||:||::..:.:|.|||.:|:|.||
Human   383 GLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTP 447

  Fly   521 IETLIRDML 529
            |:|.:.:||
Human   448 IDTFLMEML 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svpNP_001369011.1 NR_DBD_COUP_TF 200..272 CDD:143516 45/71 (63%)
NR_LBD_COUP-TF 307..542 CDD:132746 94/228 (41%)
RXRGNP_008848.1 Modulating. /evidence=ECO:0000250 1..138 25/127 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..53 11/36 (31%)
Nuc_recep-AF1 25..133 CDD:314658 17/107 (16%)
NR_DBD_RXR 137..213 CDD:143514 46/75 (61%)
Hinge 205..230 7/37 (19%)
NR_LBD_RXR_like 233..441 CDD:132741 86/211 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X118
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.910

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