Protein Alignment svp and rxrb

DIOPT Version :10

• Sequence 1: NP_001369011.1
• Gene: svp / 41491
• FlyBaseID: FBgn0003651
• Length: 826
• Species: Drosophila melanogaster
• Sequence 2: XP_012823803.1
• Gene: rxrb / 548691
• XenbaseID: XB-GENE-480167
• Length: 456
• Species: Xenopus tropicalis
• Alignment Length: 554
• Identity: 185/554 - (33%)
• Similarity: 267/554 - (48%)
• Gaps: 121/554 - (21%)

  Fly     1 MCASPSTAPGFFNPRPQSGAELSAFDIGLSRSMGLGVPPHSAWHEPPASLGGHLHAASAGPGTTT 65
            :|.||.|               |:....|.||.....||.||          .||.:..|...|:
 Frog     6 VCQSPDT---------------SSLSPPLGRSYSDTPPPPSA----------PLHPSMVGSAMTS 45

  Fly    66 GSVATGGGGTTPSSVASQQSAVIKQDLSCPSLNQAGSGHHPGIKEDLSSSLPSANGGSAGGHHSG 130
            ...:..|...:|..|           ::|    ..||   |||     ...||...|........
 Frog    46 SVNSPLGSIGSPFQV-----------INC----SVGS---PGI-----PGTPSIGYGPVSSPQIN 87

  Fly   131 SGSGSGSGVNPGHGS-DMLPLIKGHGQDMLTSIKGQPTGCGSTTPSSQANSSHSQSSNSGSQIDS 194
            | :.:.||::|...| |:.|                |.|..|.       |||.    :|..:..
 Frog    88 S-TVNLSGLHPVSSSEDVKP----------------PLGMRSM-------SSHP----NGGAVSG 124

  Fly   195 KQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQYCRLKK 259
            |:  .|.:|||:|||||||.::|||||.||||::|::|||:||.:::|.:|:..||:|||||.:|
 Frog   125 KR--LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCIVDKRQRNRCQYCRYQK 187

  Fly   260 CLKMGMRREAV-----------QRGRVPPTQPGLAGMHGQYQIANGDPMGIAGFNGHSYLSSYIS 313
            ||..||:||.:           |||:                    :..|.|.|:|.......:.
 Frog   188 CLATGMKREVISKYSPAVQEERQRGK--------------------ERDGEAEFSGAINEEMPVE 232

  Fly   314 LLLRAEPYPTSRYGQCMQ----PNNIMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALL 374
            .:|.||.....:..|.::    |::  .:.|||:.|.:.||:.|||||.||.|.||.:.|||.||
 Frog   233 KILEAELAVEQKSDQSLEGGGSPSD--PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILL 295

  Fly   375 RLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADR--VVAFMDHIRIFQEQVEKLKALHVD 437
            |..|:||.:.:.|..|:.:... :|.|.|||....:|..  |.|..|  |:..|.|.|::.:.:|
 Frog   296 RAGWNELLIASFSHRSISVKDG-ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMD 357

  Fly   438 SAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTV 502
            ..|..||:||:||..||.|||:...:|.|:||...:||.||:.:||:|..||.|||||||:||::
 Frog   358 KTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSI 422

  Fly   503 SSQVIEQLFFVRLVGKTPIETLIRDMLLSGNSFS 536
            ..:.:|.|||.:|:|.|||:|.:.:||.:.:..|
 Frog   423 GLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLS 456

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
svp	NP_001369011.1	NR_DBD_COUP_TF	200..272	CDD:143516	42/82 (51%)
		NR_LBD_COUP-TF	307..542	CDD:132746	93/236 (39%)
rxrb	XP_012823803.1	Nuc_recep-AF1	13..120	CDD:463363	37/167 (22%)
		NR_DBD_RXR	127..209	CDD:143514	42/81 (52%)
		NR_LBD_RXR_like	228..434	CDD:132741	84/210 (40%)