Sequence 1: | NP_001369011.1 | Gene: | svp / 41491 | FlyBaseID: | FBgn0003651 | Length: | 826 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_012823803.1 | Gene: | rxrb / 548691 | XenbaseID: | XB-GENE-480167 | Length: | 456 | Species: | Xenopus tropicalis |
Alignment Length: | 554 | Identity: | 185/554 - (33%) |
---|---|---|---|
Similarity: | 267/554 - (48%) | Gaps: | 121/554 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MCASPSTAPGFFNPRPQSGAELSAFDIGLSRSMGLGVPPHSAWHEPPASLGGHLHAASAGPGTTT 65
Fly 66 GSVATGGGGTTPSSVASQQSAVIKQDLSCPSLNQAGSGHHPGIKEDLSSSLPSANGGSAGGHHSG 130
Fly 131 SGSGSGSGVNPGHGS-DMLPLIKGHGQDMLTSIKGQPTGCGSTTPSSQANSSHSQSSNSGSQIDS 194
Fly 195 KQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQYCRLKK 259
Fly 260 CLKMGMRREAV-----------QRGRVPPTQPGLAGMHGQYQIANGDPMGIAGFNGHSYLSSYIS 313
Fly 314 LLLRAEPYPTSRYGQCMQ----PNNIMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALL 374
Fly 375 RLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADR--VVAFMDHIRIFQEQVEKLKALHVD 437
Fly 438 SAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTV 502
Fly 503 SSQVIEQLFFVRLVGKTPIETLIRDMLLSGNSFS 536 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
svp | NP_001369011.1 | NR_DBD_COUP_TF | 200..272 | CDD:143516 | 42/82 (51%) |
NR_LBD_COUP-TF | 307..542 | CDD:132746 | 93/236 (39%) | ||
rxrb | XP_012823803.1 | Nuc_recep-AF1 | 13..120 | CDD:288658 | 37/167 (22%) |
NR_DBD_RXR | 127..209 | CDD:143514 | 42/81 (52%) | ||
NR_LBD_RXR_like | 228..434 | CDD:132741 | 84/210 (40%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X118 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.000 |