Protein Alignment svp and nr2e3

DIOPT Version :10

• Sequence 1: NP_001369011.1
• Gene: svp / 41491
• FlyBaseID: FBgn0003651
• Length: 826
• Species: Drosophila melanogaster
• Sequence 2: NP_001007369.2
• Gene: nr2e3 / 492496
• ZFINID: ZDB-GENE-041114-63
• Length: 426
• Species: Danio rerio
• Alignment Length: 430
• Identity: 167/430 - (38%)
• Similarity: 224/430 - (52%)
• Gaps: 85/430 - (19%)

  Fly   174 PSSQAN----SSHSQSSNSGSQIDSKQ------------NIECVVCGDKSSGKHYGQFTCEGCKS 222
            |.|:.:    ||.::||.|.|..||:.            .:.|.||.|.|||||||.:.|.||..
Zfish     4 PMSEMSMVPFSSPTESSRSNSTDDSQDGKSPAPGKVLNTGLLCKVCSDTSSGKHYGIYACNGCSG 68

  Fly   223 FFKRSVRRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVP---------- 276
            ||||||||.|.|.|: |:..||:|:.||||||.|||||||:.||.::|||..|.|
Zfish    69 FFKRSVRRRLIYRCQAGTGMCPVDKAHRNQCQACRLKKCLQAGMNKDAVQNERQPRSTAQVRLDA 133

  Fly   277 ---------------PT---------QPGL-AGMHGQYQIANGDPMGIAGFNGHSYLSSYISL-- 314
                           ||         :|.| :.:.......:|.....:..|||.:::|.::.
Zfish   134 LDVDKDKEHLATTLEPTSSSTCSVISRPLLGSSISSSISSTDGSQHSNSPKNGHRFMASLMTAET 198

  Fly   315 --------------LLRAEPYPTS-RYGQCMQPNNIMGIDNICELAARLLFSAVEWAKNIPFFPE 364
                          :...||..:| .||..:.|:.  ..:::.|.:|||||.:|:||||:|.|..
Zfish   199 CAKLEPEDVDENIDVTSNEPERSSPMYGSALYPSR--EPESVYETSARLLFMSVKWAKNLPVFSH 261

  Fly   365 LQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGL------HASPMAADRVVAFMDHIRI 423
            |...|||.||...|||||:|.|.|.|:||...|||:...|      ..||.|:|        :|:
Zfish   262 LPFRDQVILLEEAWSELFLLCAIQWSLPLDNCPLLSLPDLSPTGQGKGSPSASD--------VRV 318

  Fly   424 FQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTR 488
            .||...:.|.|.||..|::||||||||..:..||.|...:|:||::||..|.::..|.||:|..|
Zfish   319 LQEVFSRFKPLQVDPTEFACLKAIVLFKPETRGLKDPEQVENLQDQSQVLLAQHIHTLYPSQVAR 383

  Fly   489 FGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 528
            ||:|||.||||..|||:.||.|||.|.:|.||:|.|:.||
Zfish   384 FGRLLLLLPSLHFVSSERIEHLFFQRTIGNTPMEKLLCDM 423

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
svp	NP_001369011.1	NR_DBD_COUP_TF	200..272	CDD:143516	46/72 (64%)
		NR_LBD_COUP-TF	307..542	CDD:132746	100/245 (41%)
nr2e3	NP_001007369.2	NR_DBD_PNR	38..129	CDD:143528	49/90 (54%)
		NR_LBD_Tlx_PNR_like	208..413	CDD:132748	92/214 (43%)