DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment svp and dsf

DIOPT Version :9

Sequence 1:NP_001369011.1 Gene:svp / 41491 FlyBaseID:FBgn0003651 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001260109.1 Gene:dsf / 33823 FlyBaseID:FBgn0015381 Length:691 Species:Drosophila melanogaster


Alignment Length:686 Identity:153/686 - (22%)
Similarity:219/686 - (31%) Gaps:352/686 - (51%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 GSQIDSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHHR 249
            |:..|...:|.|.||||:|||||||.::|:||..|||||:.||..|:|:.:.:    ||:|:.||
  Fly     2 GTAGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHR 66

  Fly   250 NQCQYCRLKKCLKMGMRREAVQ--RG-RVPPTQPGL----------------------------- 282
            |||:.|||.||.:..|.::|||  || |.|...|.|                             
  Fly    67 NQCRACRLAKCFQSAMNKDAVQHERGPRKPKLHPQLHHHHHHAAAAAAAAHHAAAAHHHHHHHHH 131

  Fly   283 ----------------AGMH------------------------------------GQYQIANGD 295
                            :|:|                                    |.:..|:|.
  Fly   132 AHAAAAHHAAVAAAAASGLHHHHHAMPVSLVTNVSASFNYTQHISTHPPAPAAPPSGFHLTASGA 196

  Fly   296 PMG-----------------------------------------------IAG------------ 301
            ..|                                               |:|            
  Fly   197 QQGPAPPAGHLHHGGAGHQHATAFHHPGHGHALPAPHGGVVSNPGGNSSAISGSGPGSTLPFPSH 261

  Fly   302 -------------------------------------------FNGHSYLS-------------- 309
                                                       .|.|:|.|              
  Fly   262 LLHHNLIAEAASKLPGITATAVAAVVSSTSTPYASAAQTSSPSSNNHNYSSPSPSNSIQSISSIG 326

  Fly   310 ----------------------------------------------------------------- 309
                                                                             
  Fly   327 SRSGGGEEGLSLGSESPRVNVETETPSPSNSPPLSAGSISPAPTLTTSSGSPQHRQMSRHSLSEA 391

  Fly   310 ----SYISLLLRA------------------------EPYPTS------RYG------------- 327
                |:.||::.|                        .|.||:      |.|             
  Fly   392 TTPPSHASLMICASNNNNNNNNNNNNGEHKQSSYTSGSPTPTTPTPPPPRSGVGSTCNTASSSSG 456

  Fly   328 ---------QCMQ------------------PNNIMGIDNICELAARLLFSAVEWAKNIPFFPEL 365
                     :|.:                  .:.::..:.:.|..|||||.||.|.|.:..|..|
  Fly   457 FLELLLSPDKCQELIQYQVQHNTLLFPQQLLDSRLLSWEMLQETTARLLFMAVRWVKCLMPFQTL 521

  Fly   366 QVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVV---AFMDHIRIFQEQ 427
            ...||..||:..|.|||:||.:|.::||.:.|:|      .||:..:||:   |....::..||.
  Fly   522 SKNDQHLLLQESWKELFLLNLAQWTIPLDLTPIL------ESPLIRERVLQDEATQTEMKTIQEI 580

  Fly   428 VEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKL 492
            :.:.:.:..|.:|..|:|||.||..:..||.||..:|.||:::||.|.::.|.:||.|.||||:|
  Fly   581 LCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRL 645

  Fly   493 LLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDM 528
            ||.||||||:.:..||.|||...:|..||..|:|||
  Fly   646 LLLLPSLRTIRAATIEALFFKETIGNVPIARLLRDM 681

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svpNP_001369011.1 NR_DBD_COUP_TF 200..272 CDD:143516 41/77 (53%)
NR_LBD_COUP-TF 307..542 CDD:132746 93/378 (25%)
dsfNP_001260109.1 NR_DBD_TLX 5..98 CDD:143537 47/92 (51%)
NR_LBD_Tlx_PNR_like 467..671 CDD:132748 75/209 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 55 1.000 Domainoid score I7416
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D34630at7147
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24083
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
44.020

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