DRSC/TRiP Functional Genomics Resources

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Protein Alignment svp and nr2f5

DIOPT Version :9

Sequence 1:NP_001369011.1 Gene:svp / 41491 FlyBaseID:FBgn0003651 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_571261.1 Gene:nr2f5 / 30427 ZFINID:ZDB-GENE-990415-253 Length:403 Species:Danio rerio


Alignment Length:379 Identity:290/379 - (76%)
Similarity:330/379 - (87%) Gaps:19/379 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 QPTGCGSTTPSSQANSSHSQSSNSGSQIDSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVR 229
            :|.|    ||.:.:.|:....:.||.:|   .|::|:||||||||||||||||||||||||||||
Zfish    26 EPGG----TPGTPSGSTPGNDALSGDKI---PNVDCMVCGDKSSGKHYGQFTCEGCKSFFKRSVR 83

  Fly   230 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIANG 294
            |||:|:|||:|:|||||||||||||||||||||:|||||||||||:..:|    ...||| ::||
Zfish    84 RNLSYTCRGNRDCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMSNSQ----SSPGQY-LSNG 143

  Fly   295 -DPMGIAGFNGHSYLSSYISLLLRAEPYPTSRYG-QCMQPNNIMGIDNICELAARLLFSAVEWAK 357
             ||     :||..|||.:|||||||||||||||| ||||.||:|||:||||||||||||||||||
Zfish   144 SDP-----YNGQPYLSGFISLLLRAEPYPTSRYGAQCMQSNNLMGIENICELAARLLFSAVEWAK 203

  Fly   358 NIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIR 422
            ||||||:||:.|||||||:.|||||||||:||||||||||||||||||||||:|:||||||||||
Zfish   204 NIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIR 268

  Fly   423 IFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPT 487
            :|||||||||||.||:|||||||:|||||:||.|||||.|:||:|||||||||||.|.||||||.
Zfish   269 VFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQCALEEYVRNQYPNQPN 333

  Fly   488 RFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLSGNSFSWPYLP 541
            |||:|||||||||.|||.|||||||||||||||||||:|||||||:|::|||:|
Zfish   334 RFGRLLLRLPSLRIVSSPVIEQLFFVRLVGKTPIETLLRDMLLSGSSYNWPYMP 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svpNP_001369011.1 NR_DBD_COUP_TF 200..272 CDD:143516 65/71 (92%)
NR_LBD_COUP-TF 307..542 CDD:132746 202/236 (86%)
nr2f5NP_571261.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 16..44 5/21 (24%)
NR_DBD_COUP_TF 54..126 CDD:143516 65/71 (92%)
NR_LBD_COUP-TF 152..387 CDD:132746 201/234 (86%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 235 1.000 Domainoid score I2291
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D296293at33208
OrthoFinder 1 1.000 - - FOG0001162
OrthoInspector 1 1.000 - - otm25721
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24083
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X118
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
87.980

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