DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment svp and nr2f5

DIOPT Version :10

Sequence 1:NP_001369011.1 Gene:svp / 41491 FlyBaseID:FBgn0003651 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_571261.1 Gene:nr2f5 / 30427 ZFINID:ZDB-GENE-990415-253 Length:403 Species:Danio rerio


Alignment Length:379 Identity:290/379 - (76%)
Similarity:330/379 - (87%) Gaps:19/379 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 QPTGCGSTTPSSQANSSHSQSSNSGSQIDSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVR 229
            :|.|    ||.:.:.|:....:.||.:|   .|::|:||||||||||||||||||||||||||||
Zfish    26 EPGG----TPGTPSGSTPGNDALSGDKI---PNVDCMVCGDKSSGKHYGQFTCEGCKSFFKRSVR 83

  Fly   230 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIANG 294
            |||:|:|||:|:|||||||||||||||||||||:|||||||||||:..:|    ...||| ::||
Zfish    84 RNLSYTCRGNRDCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMSNSQ----SSPGQY-LSNG 143

  Fly   295 -DPMGIAGFNGHSYLSSYISLLLRAEPYPTSRYG-QCMQPNNIMGIDNICELAARLLFSAVEWAK 357
             ||     :||..|||.:|||||||||||||||| ||||.||:|||:||||||||||||||||||
Zfish   144 SDP-----YNGQPYLSGFISLLLRAEPYPTSRYGAQCMQSNNLMGIENICELAARLLFSAVEWAK 203

  Fly   358 NIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIR 422
            ||||||:||:.|||||||:.|||||||||:||||||||||||||||||||||:|:||||||||||
Zfish   204 NIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIR 268

  Fly   423 IFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPT 487
            :|||||||||||.||:|||||||:|||||:||.|||||.|:||:|||||||||||.|.||||||.
Zfish   269 VFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQCALEEYVRNQYPNQPN 333

  Fly   488 RFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLSGNSFSWPYLP 541
            |||:|||||||||.|||.|||||||||||||||||||:|||||||:|::|||:|
Zfish   334 RFGRLLLRLPSLRIVSSPVIEQLFFVRLVGKTPIETLLRDMLLSGSSYNWPYMP 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svpNP_001369011.1 NR_DBD_COUP_TF 200..272 CDD:143516 65/71 (92%)
NR_LBD_COUP-TF 307..542 CDD:132746 202/236 (86%)
nr2f5NP_571261.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 16..44 5/21 (24%)
NR_DBD_COUP_TF 54..126 CDD:143516 65/71 (92%)
NR_LBD_COUP-TF 152..387 CDD:132746 201/234 (86%)

Return to query results.
Submit another query.