DRSC/TRiP Functional Genomics Resources

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Protein Alignment svp and Hnf4a

DIOPT Version :10

Sequence 1:NP_001369011.1 Gene:svp / 41491 FlyBaseID:FBgn0003651 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_071516.2 Gene:Hnf4a / 25735 RGDID:2810 Length:474 Species:Rattus norvegicus


Alignment Length:413 Identity:153/413 - (37%)
Similarity:217/413 - (52%) Gaps:48/413 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 TTPSSQANSSHSQSSNSGSQIDSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSC 236
            |:||..||.:.|.|....:.        |.:|||:::|||||..:|:|||.||:||||:|..|||
  Rat    40 TSPSEGANLNSSNSLGVSAL--------CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 96

  Fly   237 RGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIANGDPMGIAG 301
            |.||.|.:|:..||||:|||||||.:.||::||||..|     ..::.....|:           
  Rat    97 RFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNER-----DRISTRRSSYE----------- 145

  Fly   302 FNGHSYLSSYISLLLRAE------PYPTSRYGQCMQPNNIMGIDNICELAARLLFSAVEWAKNIP 360
               .|.|.| |:.||:||      ..|.|.....::...|..|.::||.....|...|||||.||
  Rat   146 ---DSSLPS-INALLQAEVLSQQITSPISGINGDIRAKRIANITDVCESMKEQLLVLVEWAKYIP 206

  Fly   361 FFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA---AAGLHASPMAADRVVAFMDHIR 422
            .|.||.:.|||||||....|..:|.|::.||......||.   ....|...:|....|:    ||
  Rat   207 AFCELLLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVS----IR 267

  Fly   423 IFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPT 487
            |..|.|...:.|.:|..||:|||||:.|..||.||||...|:.|:.:.|.:||:|...:..:...
  Rat   268 ILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRG 332

  Fly   488 RFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLSGNSFSWPYL--PSMXHTMWRQ 550
            |||:|||.||:|::::.|:|||:.|::|.|...|:.|:::|||.|::...|:.  |.. |.|...
  Rat   333 RFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLGGSASDAPHAHHPLHPHLMQEH 397

  Fly   551 LTTTXSSAAAVAAATLNINSGGG 573
            :.|.     .:.|.|:..:...|
  Rat   398 MGTN-----VIVANTMPSHLSNG 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svpNP_001369011.1 NR_DBD_COUP_TF 200..272 CDD:143516 44/71 (62%)
NR_LBD_COUP-TF 307..542 CDD:132746 91/245 (37%)
Hnf4aNP_071516.2 NR_DBD_HNF4A 60..135 CDD:143518 46/79 (58%)
NR_LBD_HNF4_like 151..373 CDD:132729 85/226 (38%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:P41235 368..376 3/7 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 413..450 1/3 (33%)

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