Protein Alignment svp and nhr-208

DIOPT Version :10

• Sequence 1: NP_001369011.1
• Gene: svp / 41491
• FlyBaseID: FBgn0003651
• Length: 826
• Species: Drosophila melanogaster
• Sequence 2: NP_506034.2
• Gene: nhr-208 / 187662
• WormBaseID: WBGene00011099
• Length: 410
• Species: Caenorhabditis elegans
• Alignment Length: 407
• Identity: 102/407 - (25%)
• Similarity: 159/407 - (39%)
• Gaps: 99/407 - (24%)

  Fly   183 SQSSNSGSQIDS------KQNI--ECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGS 239
            ||.|:|.|.:.|      :.|:  :|.:||:.:.|.||...:|.|||:||:|:|......:|:..
 Worm    18 SQESSSYSILTSTSIKCPRHNLPSKCEICGNPAIGYHYDIASCNGCKAFFRRTVITGRQVACKKW 82

  Fly   240 RNC-----PIDQHHRNQCQYCRLKKCLKMGM-----RREAVQRGRVPPTQ--------------P 280
            ..|     ||   :|..|..||..||:|:||     |.|....|.:...|              |
 Worm    83 GTCLEEEIPI---NRRICPGCRFSKCVKVGMNPRAIRAEISSNGEILKNQLLKNREADKLVMLSP 144

  Fly   281 GLAGMHGQYQIANGDPMGIA-------------GFNGHSYLSSY-----ISLLLRAEP------Y 321
            ..|          .|.:.|:             .||. .:.|:|     ::.:|:|.|      .
 Worm   145 KTA----------EDDLSISISKLSLIENKIDDLFNS-KWPSNYCDWRTVTEILKAHPILEMSKI 198

  Fly   322 PTSRYGQCMQPNNIM----GIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELF 382
            |...:    |||.:.    |..:...||      |:|:.|.:..||:|.: |.|.  :||...||
 Worm   199 PNLSF----QPNQLFPDHAGFAHNASLA------ALEFTKMLDIFPKLSI-DTVQ--KLVRHGLF 250

  Fly   383 VLNASQCS----MPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSC 443
            :..:...|    ...:...|....|..:...|......::||.:|.|..:.....:.::..||..
 Worm   251 MCGSMMTSRRSIQKFNSDTLRRTDGTISGKPAKSWNGVWVDHRKIVQRVLRAFLRIKLNDVEYLF 315

  Fly   444 LKAIVLFTTDACGL--SDVTHIESLQEK-SQCALEEYCRTQYP--NQPTRFGKLLLRLPSLRTVS 503
            ||.|.:.......|  .|...||..:.: :||.| .||..:|.  |.|:||..:|..:.|:..
 Worm   316 LKVITILNPAVSDLFAQDQKIIERERNRFAQCLL-TYCLREYAENNGPSRFASVLSIISSMEL-- 377

  Fly   504 SQVIEQLFFVRLVGKTP 520
            .|..|:.|.:.|....|
 Worm   378 QQKEEKSFNILLRASFP 394

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
svp	NP_001369011.1	NR_DBD_COUP_TF	200..272	CDD:143516	29/81 (36%)
		NR_LBD_COUP-TF	307..542	CDD:132746	58/238 (24%)
nhr-208	NP_506034.2	ZnF_C4	42..112	CDD:197701	27/72 (38%)
		HOLI	216..376	CDD:214658	43/169 (25%)