DRSC/TRiP Functional Genomics Resources

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Protein Alignment svp and nhr-152

DIOPT Version :10

Sequence 1:NP_001369011.1 Gene:svp / 41491 FlyBaseID:FBgn0003651 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_504990.2 Gene:nhr-152 / 182533 WormBaseID:WBGene00015705 Length:383 Species:Caenorhabditis elegans


Alignment Length:372 Identity:84/372 - (22%)
Similarity:132/372 - (35%) Gaps:96/372 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 HSQSSNSGSQIDSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQ 246
            |..::||..:..|..|  |.:|...:.|.|....||:|||:||:|.........|..:.:| .|.
 Worm     5 HQVANNSILKFPSPFN--CKICNRPAHGHHCDVATCKGCKTFFRRMYLLKSELRCYINSDC-FDL 66

  Fly   247 HHRNQ----CQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMH------------------GQY 289
            ..|.:    |:.||.||||.:||...|:...........|....                  .|:
 Worm    67 DKRTEPLLRCRACRFKKCLLVGMNPNALNFRTTKNLTQSLKNSKEEKIKDVINELTYLDCKLEQF 131

  Fly   290 QIANGDP--MGIAGFNGHSYLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNI----------- 341
            :::..:|  ..|.|.......||.:||..:..|:|    |....||:|....|:           
 Worm   132 RLSAYNPNWTEIGGLEDLLRCSSKLSLSNKFGPFP----GWPYHPNHIFASSNLDYNFKTYSPHR 192

  Fly   342 CELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHA 406
            .:.....|.:::|:.|..|||.:|...||:.|:|                  ||  ::..:.||:
 Worm   193 KQWRFFNLLTSIEFLKTFPFFLKLDTKDQLILMR------------------HV--VVGCSNLHS 237

  Fly   407 S-------------PMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLS 458
            :             |....|..........|......|..:.|...||..||.|.:     |..:
 Worm   238 AYYTLKNKYEDLRQPDGTQRPKKSEPQYSTFAMVFYALMRVGVHYIEYLLLKMIFI-----CNPA 297

  Fly   459 DVTHIESLQEKSQCALEE-----------YC-RTQYPNQPTRFGKLL 493
                |.:|...:|..||:           || ::...:.|||:..|:
 Worm   298 ----IPNLSSNAQYKLEKGRSFYSEMLLVYCLQSLNSSGPTRYVDLI 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svpNP_001369011.1 NR_DBD_COUP_TF 200..272 CDD:143516 26/75 (35%)
NR_LBD_COUP-TF 307..542 CDD:132746 48/223 (22%)
nhr-152NP_504990.2 ZnF_C4 20..92 CDD:197701 26/74 (35%)
HOLI 197..349 CDD:214658 37/173 (21%)

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