DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment svp and nhr-149

DIOPT Version :10

Sequence 1:NP_001369011.1 Gene:svp / 41491 FlyBaseID:FBgn0003651 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_504874.2 Gene:nhr-149 / 182174 WormBaseID:WBGene00015397 Length:375 Species:Caenorhabditis elegans


Alignment Length:378 Identity:81/378 - (21%)
Similarity:115/378 - (30%) Gaps:135/378 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHR-----NQCQYCRLKK 259
            |.:|...:.|.||...:|:|||:||:|.....:...|..:..| .|.:.|     ::|:.||.::
 Worm     7 CSICSRPAQGYHYDVISCKGCKTFFRRMWLSKIKEMCPLNNKC-FDFNRRINMSLSKCRACRFQR 70

  Fly   260 CLKMGMRREAVQ-------------------------------------RGRVPPTQPGLAGMHG 287
            ||.:||...|:|                                     ..|.....|.|:...|
 Worm    71 CLNVGMNPAAIQCDGNPKKDSSHFRDFDSIDEKIKNIIDTLTYVELKLENYRKSAYNPVLSLSTG 135

  Fly   288 QYQIANGD----------PMG--IAGFNGHSYLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDN 340
            ...:..|.          ||.  ..||..|...||.:..:...||.|.|........|       
 Worm   136 LDDLIEGSCSLSLAEIYGPMSGWPLGFEEHQLPSSSMRNVSCEEPCPVSNRKYWTHCN------- 193

  Fly   341 ICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLH 405
                    :.:.:|:.|...||.||...|:..|.|                  |.  ||....||
 Worm   194 --------MLTTIEYFKTFKFFHELSSRDKFVLAR------------------HT--LLLCQNLH 230

  Fly   406 AS-------------------PMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFT 451
            .|                   |...:|      |..|....:|.|....:...||..|||| .|.
 Worm   231 ISHYTVSHNFDSCLQPDGSMQPKQDER------HYPIAMMSIEPLVRCKIQHVEYVLLKAI-CFC 288

  Fly   452 TDACGLSDVTHIESLQEKSQ--CALEEY---------CRTQYPNQPTRFGKLL 493
            ..|        :..|.:.:|  .|.|.|         |...|.:.|..|.:|:
 Worm   289 NPA--------VPELSQNAQRILAKERYCFADILINHCLRNYTDGPGHFAELI 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svpNP_001369011.1 NR_DBD_COUP_TF 200..272 CDD:143516 25/113 (22%)
NR_LBD_COUP-TF 307..542 CDD:132746 46/217 (21%)
nhr-149NP_504874.2 ZnF_C4 6..78 CDD:197701 23/71 (32%)
HOLI 190..342 CDD:214658 40/194 (21%)

Return to query results.
Submit another query.