Protein Alignment svp and nhr-148

DIOPT Version :10

• Sequence 1: NP_001369011.1
• Gene: svp / 41491
• FlyBaseID: FBgn0003651
• Length: 826
• Species: Drosophila melanogaster
• Sequence 2: NP_504871.1
• Gene: nhr-148 / 182172
• WormBaseID: WBGene00015396
• Length: 370
• Species: Caenorhabditis elegans
• Alignment Length: 359
• Identity: 81/359 - (22%)
• Similarity: 128/359 - (35%)
• Gaps: 106/359 - (29%)

  Fly   200 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQ----CQYCRLKKC 260
            |.:|...:.|.||...:|:|||:||:|....|....|..:..| .|....|:    |:.||.:||
 Worm    11 CSICRRNAKGYHYDVISCKGCKTFFRRMSLINFQGKCDLNNQC-FDLTKANEPYLRCRACRYRKC 74

  Fly   261 LKMGMRREAVQ------------------------------RGRVPPTQPGLAGMHGQ------Y 289
            |.:||.::|:|                              :.|:....|     |.|      .
 Worm    75 LDVGMNQKAIQIPERNQTFGVIETMTKNTIDALVYLEEKLEKFRLSADNP-----HWQAVSDLEL 134

  Fly   290 QIANGDPMGIAGFNGHSYLSSYISLLLRAEPYPTSRYGQCMQPNNI-----MGIDNICELAARLL 349
            .:.||..:|:|...|.::.:|...........|:|.  :.:|.|.:     ..|..:|.     |
 Worm   135 YLNNGSNLGLADKFGPTFENSVHESFEPKNSLPSSL--KAVQNNKLNHCPTKKIWTLCN-----L 192

  Fly   350 FSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADR- 413
            .:.||:.|...:|.:|...|::.|.|                  ||  :|....||.|..:..:
 Worm   193 LTTVEYLKTFNYFKDLSALDKLILAR------------------HV--ILIGKNLHISNYSFSKK 237

  Fly   414 -----------------VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVT 461
                             .||||....:.:.|::.:        ||..||||.........||...
 Worm   238 FTGCLNIETDAQRERHYPVAFMLMAPLIRSQIQPI--------EYILLKAICCCNPAVPNLSQKA 294

  Fly   462 HIESLQEKSQ--CALEEYCRTQYPNQPTRFGKLL 493
            .....:|:.|  ..|.:||:....|.|.||.:|:
 Worm   295 QSTLARERGQFVSILFDYCQRSGKNGPGRFAELI 328

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
svp	NP_001369011.1	NR_DBD_COUP_TF	200..272	CDD:143516	27/105 (26%)
		NR_LBD_COUP-TF	307..542	CDD:132746	45/212 (21%)
nhr-148	NP_504871.1	ZnF_C4	10..80	CDD:197701	24/69 (35%)
		HOLI	191..337	CDD:214658	38/171 (22%)