Protein Alignment svp and nhr-147

DIOPT Version :10

• Sequence 1: NP_001369011.1
• Gene: svp / 41491
• FlyBaseID: FBgn0003651
• Length: 826
• Species: Drosophila melanogaster
• Sequence 2: NP_504873.2
• Gene: nhr-147 / 182170
• WormBaseID: WBGene00015395
• Length: 373
• Species: Caenorhabditis elegans
• Alignment Length: 356
• Identity: 80/356 - (22%)
• Similarity: 124/356 - (34%)
• Gaps: 70/356 - (19%)

  Fly   182 HSQSSNSGSQIDSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQ 246
            |.:|:|..:.      |.|.|||..:.|.||...:|:|||:||:|.........| |..|...|.
 Worm     2 HIESNNFITP------ITCSVCGRSAKGYHYDVISCKGCKTFFRRMYLLKSKIIC-GLNNSCFDL 59

  Fly   247 HHRNQ----CQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIANGDPMG--------- 298
            .::|:    |:.||.|||:.:||.|..:|.............::.|...:..|.|.
 Worm    60 KNKNEPYLRCRACRYKKCIDVGMNRNGIQSSESKKEFNKTQKLNFQVMESADDVMNSIIERLSYV 124

  Fly   299 --------IAGFNGHSYLSSYISLLLRAE---------------------PYPTSRYGQCMQPNN 334
                    .:.||  ...||:.||....|                     .:||.  .|..:.|.
 Worm   125 ESKLEIFRTSSFN--PQWSSFSSLKYLLEGTCQLSSTEKSENGLEKIYIIDFPTG--NQYTKTNK 185

  Fly   335 IMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 399
              .|..:|.     |.:..|:.|....|.::...|::.|.|.:.....:|:.|..::.......|
 Worm   186 --KIWTLCN-----LLTITEYIKTFECFHKISSNDRLVLTRHIILMCKILHESHYAVSRKFDNYL 243

  Fly   400 AAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIE 464
            ...|...|....        |..:....:..|...|:...||..|||:........|||......
 Worm   244 NPDGTQESKTEM--------HHSLLAMSISPLVRTHIQPVEYVLLKAMCFCNPAVTGLSQHAQTT 300

  Fly   465 SLQEKSQCA--LEEYCRTQYPNQPTRFGKLL 493
            ..:|:.|..  |.:.||....:.|..|.:|:
 Worm   301 LAKERQQFGNLLFDLCRKNRRDGPGHFVELV 331

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
svp	NP_001369011.1	NR_DBD_COUP_TF	200..272	CDD:143516	28/75 (37%)
		NR_LBD_COUP-TF	307..542	CDD:132746	42/210 (20%)
nhr-147	NP_504873.2	ZnF_C4	13..85	CDD:197701	27/72 (38%)
		HOLI	192..340	CDD:214658	31/153 (20%)