Protein Alignment svp and nhr-79

DIOPT Version :9

• Sequence 1: NP_001369011.1
• Gene: svp / 41491
• FlyBaseID: FBgn0003651
• Length: 826
• Species: Drosophila melanogaster
• Sequence 2: NP_507734.4
• Gene: nhr-79 / 180265
• WormBaseID: WBGene00003669
• Length: 463
• Species: Caenorhabditis elegans
• Alignment Length: 388
• Identity: 81/388 - (20%)
• Similarity: 143/388 - (36%)
• Gaps: 121/388 - (31%)

  Fly   199 ECVVC-GDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGS--RNCPIDQHHRNQCQYCRLKKC 260
            :|:|| ...::..|:|..:|:.|.:||:||:..:..|.|.|.  .:|.||...|..|::||||||
 Worm     5 KCMVCDSPNATNYHFGAQSCKACAAFFRRSIAMDQCYECLGDGVHSCKIDHTLRLNCRHCRLKKC 69

  Fly   261 LKMGMRREAVQRGR---------------------VPPTQPGLAGMHGQY--QIANGDPMGIAGF 302
            .|.||.|:.||..|                     .||.|||.:....|:  |.:..:
 Worm    70 QKAGMMRDLVQAKREIKSDKGKNSRNSSQSEDFFSPPPEQPGPSNYFDQFPWQASENE------- 127

  Fly   303 NGHSYLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFSAVEWAKNIPFFPELQV 367
                           .:|||:|...:.|. .|:||||.:.:.        ::....:..||:: .
 Worm   128 ---------------MDPYPSSPKIRKMS-ENLMGIDELQQF--------IQIPAGVDDFPDI-F 167

  Fly   368 TDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPM-AADRVVAFMDHIRIFQEQVEKL 431
            ||...:...:.|                   ::.|..:.:.| ..:|:.....   ::.|||..|
 Worm   168 TDSDEIRSRMTS-------------------ISEASAYVTGMEEEERLFGLAG---LYTEQVINL 210

  Fly   432 ----KALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKL 492
                :..:.|....|...|..:...|...|....| .:.::|::            |..|.....
 Worm   211 NMRRRITYTDRLLGSVFDAPCVCPYDKADLKLFDH-RTYRQKNR------------NDYTMILDY 262

  Fly   493 LLRLPSLRTVSSQ--------------VIEQLFFVRLVGKTPIETLIRDMLLSGNSFSWPYLP 541
            :.|.|...::|..              :::|.::.:::..|      .|:|::.|.   .|||
 Worm   263 INRFPEFESLSKSEKTVLFRTAAAVDVLLDQSYYSQVIFPT------EDVLVTANG---EYLP 316

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
svp	NP_001369011.1	NR_DBD_COUP_TF	200..272	CDD:143516	30/74 (41%)
		NR_LBD_COUP-TF	307..542	CDD:132746	42/254 (17%)
nhr-79	NP_507734.4	ZnF_C4	5..77	CDD:197701	28/71 (39%)
		HOLI	253..429	CDD:214658	13/85 (15%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910