Protein Alignment svp and nhr-11

DIOPT Version :9

• Sequence 1: NP_001369011.1
• Gene: svp / 41491
• FlyBaseID: FBgn0003651
• Length: 826
• Species: Drosophila melanogaster
• Sequence 2: NP_001041063.1
• Gene: nhr-11 / 177724
• WormBaseID: WBGene00003610
• Length: 459
• Species: Caenorhabditis elegans
• Alignment Length: 465
• Identity: 91/465 - (19%)
• Similarity: 158/465 - (33%)
• Gaps: 149/465 - (32%)

  Fly   200 CVVCGDKSS-GKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHH-----RNQCQYCRLK 258
            |.||...:: ..|:|...|:.|.:||:|::..:|.|.|.....|.|  |.     |..|:.|||:
 Worm     5 CAVCESPTAFTLHFGGRCCKACAAFFRRTIALDLKYECAADDPCEI--HFKFPGMRLVCRECRLR 67

  Fly   259 KCLKMGMRREAVQRGR-----------------VP------------------------------ 276
            ||...|||.|.|:..|                 .|
 Worm    68 KCYSAGMRSELVRSKRENFACTRRKDSRNNSDAAPNSNSPSTRQSSSPEEMDDWSFQMFEEKPKI 132

  Fly   277 ---PTQPGLAGMHGQYQIANGDPMGIAGFNGHSYLSSYISLLLRAEP-----------------Y 321
               |..|.::......|:...:....:.|:| .|.|||.|......|                 |
 Worm   133 EDLPLTPSISHPPLPTQLMPEESSRTSSFDG-GYCSSYPSSSAATHPSPPGMLYSIENNSILQYY 196

  Fly   322 PTSRYGQCMQPNNIM----GIDNICELAARL---------------------------LFSAVEW 355
            .:...|.|.: ..||    |:|.|.:..|.|                           ||   ::
 Worm   197 HSMETGLCSK-RRIMYTNTGMDFILDTHANLQCPFTVNDLRPHDYRNFRGMLRHDFVMLF---DY 257

  Fly   356 AKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVA--PLLAAAGLHAS----PMAADRV 414
            |...|.|......::....|.:.:..|:|:::..:..|..|  .::...|.:.:    ||:.:.:
 Worm   258 ATRFPEFNSFTSHEKNMFYRQIVAVDFILSSAYYTAKLGQAHRQMVLTNGEYLNMDPLPMSGNEI 322

  Fly   415 VA--FMD--------------HIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHI 463
            .|  :.|              ||.|::|.:.....|:|...|:..|||:.::......|:
 Worm   323 DARRYFDCDEDFSKYRALMPMHIAIWEESIVPFSKLNVTFEEFCLLKALTVWQATYFKLT----- 382

  Fly   464 ESLQEKSQCA---------LEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKT 519
            |:.:||  |.         |.:.|.:.......|.|:||:.:..||..:.::......:.:....
 Worm   383 ENGREK--CRRQRNIIIGFLSKMCHSPGGGGEHRVGELLMSMNYLRESAQKLTTSYVMLTVFNVL 445

  Fly   520 PIETLIRDML 529
            ..::::.:||
 Worm   446 NCDSMLHEML 455

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
svp	NP_001369011.1	NR_DBD_COUP_TF	200..272	CDD:143516	28/77 (36%)
		NR_LBD_COUP-TF	307..542	CDD:132746	56/302 (19%)
nhr-11	NP_001041063.1	ZnF_C4	4..77	CDD:197701	26/73 (36%)
		HOLI	247..426	CDD:214658	36/188 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910