Protein Alignment svp and nhr-46

DIOPT Version :9

• Sequence 1: NP_001369011.1
• Gene: svp / 41491
• FlyBaseID: FBgn0003651
• Length: 826
• Species: Drosophila melanogaster
• Sequence 2: NP_001023065.1
• Gene: nhr-46 / 177350
• WormBaseID: WBGene00003636
• Length: 576
• Species: Caenorhabditis elegans
• Alignment Length: 479
• Identity: 107/479 - (22%)
• Similarity: 163/479 - (34%)
• Gaps: 154/479 - (32%)

  Fly   158 MLTSIKGQPTGCGSTTPSSQANSSHSQSSNSGSQIDSKQNIECVVCGDKSSGK-HYGQFTCEGCK 221
            |:...:...||....|....|..:.:.:.:..|..:..:...||.||.:|:.: |||..:|.|||
 Worm   104 MVVKQENGETGRNFMTMKQDALQAITNTVSRNSPPNVIKGERCVGCGSESAIRVHYGASSCHGCK 168

  Fly   222 SFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGM-----RREAVQRGRVPPTQPG 281
            :||:|||.....|.|....:|.|....||:|:.|||:.||:.||     |.|..:..|:|
 Worm   169 AFFRRSVFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSKIERMP----- 228

  Fly   282 LAGMHGQYQIANGDPMGIAGFNGHSYLSS----------YISLLLRAEPYPTSRYGQCMQP---- 332
                        |:...::..||.|:.||          ..||...|....|..:....||
 Worm   229 ------------GNTCTVSAANGVSHSSSAASASPEHKFSFSLSTIAPSTSTGSFSSGSQPAPIE 281

  Fly   333 -------------------------------------------NNIMG----------------- 337
                                                       |::||
 Worm   282 STNSSGSEAEVLDRKLIQENQLTLFMVALEKQTEQLTDDDVKDNDVMGAWSRDITLTFGLQHPQM 346

  Fly   338 ----------IDNICELAARLLFS-------AVEWAKNIPFFPELQVTDQVALLRLVWSEL-FVL 384
                      .|.|.| ||.|..|       |.:||..||.|..|.:.||..|.:..:... ::.
 Worm   347 VIKRLPLKYSCDRIME-AADLYLSWYRSFVFAADWAMGIPEFRVLPLADQTTLFKQNFMAFGWIT 410

  Fly   385 NASQC-SMPLHVAPLLAAAGLHASPMAADRVVAFMDH-----------------IRIFQEQVEKL 431
            .|.:| .:..|         |...|:.....:.:.|.                 .::....|:.:
 Worm   411 FAYKCFELKQH---------LTGMPLGNGAYIPYNDEDQKKLPERWAQTYGVVCRKLIDLIVKAM 466

  Fly   432 KALHVDSAEYSCLKAIVLFTTDACGLSDVTH--IESLQEKSQCALEEYCRTQYP-----NQPTRF 489
            ..|.:...||..:|.|.||..| |.||:...  ...::::...||..:...:||     .:.||.
 Worm   467 IELQITEEEYCLIKTISLFQQD-CILSEAGQGICSRMRDRLLDALSAHIEKRYPYHTTSQRMTRA 530

  Fly   490 GKLLLRLPS---LRTVSSQVIEQL 510
            .|:.|.|||   :..|.|.:|.||
 Worm   531 LKISLMLPSFSHIGQVESTLITQL 554

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
svp	NP_001369011.1	NR_DBD_COUP_TF	200..272	CDD:143516	33/77 (43%)
		NR_LBD_COUP-TF	307..542	CDD:132746	62/324 (19%)
nhr-46	NP_001023065.1	ZnF_C4	146..215	CDD:197701	31/68 (46%)
		NR_LBD	365..540	CDD:132726	40/184 (22%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910