Protein Alignment svp and nhr-69

DIOPT Version :10

• Sequence 1: NP_001369011.1
• Gene: svp / 41491
• FlyBaseID: FBgn0003651
• Length: 826
• Species: Drosophila melanogaster
• Sequence 2: NP_492615.2
• Gene: nhr-69 / 172840
• WormBaseID: WBGene00003659
• Length: 373
• Species: Caenorhabditis elegans
• Alignment Length: 356
• Identity: 106/356 - (29%)
• Similarity: 173/356 - (48%)
• Gaps: 24/356 - (6%)

  Fly   200 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMG 264
            |.:|.|||:|||||..:|:|||.||:||:|:...|.||..:||.:.::.||.|:.|||:||:|.|
 Worm     6 CHICNDKSTGKHYGAISCDGCKGFFRRSIRKRYHYQCRFEQNCDVTKNKRNACRACRLQKCVKAG 70

  Fly   265 MRREAVQRGRVPPTQPGLAGMHGQYQIANG-------DPMGIAGFNGHSYLSSYISLLLRAEPYP 322
            |:..|:|..|         ...|:.:...|       |.:..|........||.|.......||.
 Worm    71 MKSNAIQNER---------DAIGKRKKTTGAEKEDLIDQLVAAETLCQQLRSSVIKNTSSLAPYD 126

  Fly   323 TSRYGQCMQPNNIMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNAS 387
            ..:.....:......:|:|.:...:.|...:||||::|.|..|...||.|||:...:.:.||..:
 Worm   127 CGKVKWNYEDARAATLDDIGKSIHQQLVLFIEWAKSLPQFSFLAQADQAALLKGGAASIIVLGVA 191

  Fly   388 QCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHI--RIFQEQVEKLKALHVDSAEYSCLKAIVLF 450
            ..|:.|.|...:..|.....|......|..::.:  ||..|.|..::.|::|..||..||||:.|
 Worm   192 YRSICLTVENTICLANDTLLPKEHATQVGDINCVVGRIIDEIVNPMRRLNMDLIEYVALKAILFF 256

  Fly   451 TTDACGLSDVTHIESLQEKSQCALEEYC------RTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQ 509
            ......::|.:.:|:.:.....:|:..|      ..:..:...|.|||||.||||:.::.|::|.
 Worm   257 NPVVREINDQSPVENARYAFLRSLQRRCTDKALENMEDESMDCRSGKLLLLLPSLQAIAQQLVED 321

  Fly   510 LFFVRLVGKTPIETLIRDMLLSGNSFSWPYL 540
            :...||.|...:::|:.:::|:....|.|.:
 Worm   322 VQLARLFGLVNVDSLMEELILNDMKPSDPQI 352

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
svp	NP_001369011.1	NR_DBD_COUP_TF	200..272	CDD:143516	36/71 (51%)
		NR_LBD_COUP-TF	307..542	CDD:132746	64/242 (26%)
nhr-69	NP_492615.2	NR_DBD_HNF4A	6..81	CDD:143518	38/83 (46%)
		NR_LBD	98..340	CDD:472173	63/241 (26%)