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Protein Alignment CG3942 and Gpcpd1

DIOPT Version :9

Sequence 1:	NP_650171.2	Gene:	CG3942 / 41489	FlyBaseID:	FBgn0038008	Length:	739	Species:	Drosophila melanogaster
Sequence 2:	NP_001342578.1	Gene:	Gpcpd1 / 74182	MGIID:	104898	Length:	682	Species:	Mus musculus

Alignment Length:	759	Identity:	209/759 - (27%)
Similarity:	336/759 - (44%)	Gaps:	151/759 - (19%)

- Green bases have known domain annotations that are detailed below.

  Fly    43 PFCVVF--HSSLNGNEYVAISGNCPSLGNWDPKE-VYILAKNDCISCLCNCRQFEASLEIPRNID 104
            |..|.|  ..:|...|..||.|:|.:||||:|:. |.::.:|:....:.    ::|.:.:.|.:.
Mouse     3 PSQVTFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALINENETGDSVL----WKAVIALNRGVS 63

  Fly   105 IHYRY---CVVIHDPET----DEVYIRFWESQLYPRVIRTCQN-MLKNCDVFGKPHDDDEANQVD 161
            :.|||   |.:  :|:|    .:|.:..||:.|.||.|...:: ::.:...|| .|:..|.  :|
Mouse    64 VKYRYFRGCFL--EPKTIGGPCQVIVHKWETHLQPRSITPLESEIIIDDGQFG-IHNGVET--LD 123

  Fly   162 RGWATTETIVHLKIF---NAPFCWQRQKPRLLYVHVQPMFEVPENPCNEPANPIKMVSSQTRLSR 223
            .||.|.:|.:.|::.   ..|....::|.:.....|:...|..|...::..:.:    |.|.|.:
Mouse   124 SGWLTCQTEIRLRLHFSEKPPVSISKKKFKKSRFRVKLTLEGLEEDEDDDDDKV----SPTVLHK 184

  Fly   224 YLSTREIKAGNQYLQLAQVEVTNLCVQNALAAQQRFGAR-----CG-----------------PK 266
            ..::.||                     :|.:...|..|     ||                 |.
Mouse   185 MSNSLEI---------------------SLISDNEFKCRHSQPECGYGLQPDRWTEYSIQTMEPD 228

  Fly   267 DMELFHCSIAFPEETLYRLDLYTYAHKAGYDEPPYHYGYGFLMPDQLLGTEGSARV---KITCAS 328
            ::||.   ..|.||.|..       |....|..|.|.|...|:...:..:..||.:   .|...:
Mouse   229 NLELI---FDFFEEDLSE-------HVVQGDVLPGHVGTACLLSSTIAESGRSAGILTLPIMSRN 283

  Fly   329 THRPLMEMCVRYLIIRPLPNFRCDLSHSYERYWRKNRLCMNIGHKGSGN---TYRLGSDVVRENT 390
            :.:.:.::.|.::||:|||.:.|.:..|:.:|| |.|:.:::||:|:||   |.:|..  |:|||
Mouse   284 SRKTIGKVRVDFIIIKPLPGYSCSMQSSFSKYW-KPRIPLDVGHRGAGNSTTTAKLAK--VQENT 345

  Fly   391 LYGFKQAVLANADMVEMDVQLTQDAQVVVYHDFVLRFMLQRMPSFEDLLENQDLLIFAYENLNKL 455
            :...:.|....|..||.||.|::|...|||||......::|    :..:..|     .||
Mouse   346 IASLRNAASHGAAFVEFDVHLSKDFVPVVYHDLTCCLTMKR----KKFVHTQ-----KYE----- 396

  Fly   456 MLLAMGGSKRKDLIAVPLEAFSYDQLKEVKVLRFAGSKGCDKSC-----DRMLLEQRPFPLLLDL 515
                   :...:|..:|::..::|||:.:|:......|..|:..     :....|.:|||.|..:
Mouse   397 -------ADPVELFEIPVKELTFDQLQLLKLSHVTALKTKDRKQSLYEEENFFSENQPFPSLKMV 454

  Fly   516 LDEENLPVDMGFLIEIKWPQMTNMRRWESGSFKPTFDRNFYVDTILEIVLNKAGKRRIVFCSFDA 580
            |  |:||.::||.|||||........|: |:....||.|.::|.||:.||..:|||||||.||||
Mouse   455 L--ESLPENVGFNIEIKWICQHRDGVWD-GNLSTYFDMNVFLDIILKTVLENSGKRRIVFSSFDA 516

  Fly   581 DICAMVRFKQNVYPVTLLLEDPHSPV--QYADQRVSVQDVAVRFCNSLEFLGLTLHANSLLNKPS 643
            |||.|||.|||.||: |.|....|.:  :..|.|.....:|:.|......||:..|...||..||
Mouse   517 DICTMVRQKQNKYPI-LFLTQGKSDIYPELMDLRSRTTPIAMSFAQFENILGINAHTEDLLRNPS 580

  Fly   644 TMAYLHQINLDAFVYGSSTIDLEIRNKLKKHGVLGIIYDRL-------------DQLDQVGEELE 695
            .:.......|..|.:|..|.|.|.|.|||:.||.|:||||:             :||:::.:||.
Mouse   581 YVQEAKAKGLVIFCWGDDTNDPENRRKLKEFGVNGLIYDRIYDWMPEQPNIFQVEQLERLKQELP 645

  Fly   696 GDTMCTIDSVTTRRVIQETEVEEWIQKCGYKPETSIVVHNIYID 739
            ....|...:|:                 .:.|.:..|..:|::|
Mouse   646 ELKNCLCPTVS-----------------HFIPSSFCVEPDIHVD 672

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.