DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3942 and Gde1

DIOPT Version :9

Sequence 1:NP_650171.2 Gene:CG3942 / 41489 FlyBaseID:FBgn0038008 Length:739 Species:Drosophila melanogaster
Sequence 2:NP_062526.1 Gene:Gde1 / 56209 MGIID:1891827 Length:331 Species:Mus musculus


Alignment Length:127 Identity:36/127 - (28%)
Similarity:55/127 - (43%) Gaps:26/127 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   307 FLMPDQ--LLGTEGSARVKITCASTHRPLMEMCV----RYLIIR-----PLPNFRCDLSHSYERY 360
            :|..||  |||......|.:...:  |.....||    .|:::|     |:|:.|     :.:..
Mouse     2 WLWEDQGGLLGPFSFVLVLLLVVT--RSPFNACVLTGSLYILLRFFSFEPVPSRR-----ALQVL 59

  Fly   361 WRKNRLCMNIGHKGSGNTYRLGSDVVRENTLYGFKQAVLANADMVEMDVQLTQDAQVVVYHD 422
            ..::|:.. |.|:|       ||....||||...:||....|..||:|::.|.|...|:.||
Mouse    60 KPRDRVSA-IAHRG-------GSHDAPENTLAAIRQAAKNGATGVELDIEFTSDGVPVLMHD 113

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3942NP_650171.2 CBM20_Prei4 44..164 CDD:99888
GDPD_GDE5 368..684 CDD:176549 20/55 (36%)
GDPD 372..685 CDD:281062 19/51 (37%)
Gde1NP_062526.1 GDPD_GDE1 68..323 CDD:176515 20/53 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0584
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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