DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3942 and gdpd1

DIOPT Version :10

Sequence 1:NP_650171.2 Gene:CG3942 / 41489 FlyBaseID:FBgn0038008 Length:739 Species:Drosophila melanogaster
Sequence 2:NP_001004118.1 Gene:gdpd1 / 445504 ZFINID:ZDB-GENE-040822-22 Length:318 Species:Danio rerio


Alignment Length:270 Identity:56/270 - (20%)
Similarity:92/270 - (34%) Gaps:120/270 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   350 RC-DLSHSYERYWRKNRLCMNIGHKGSGNTYRLGSDVVRENTLYGFKQAVLANADMVEMDVQLTQ 413
            :| .|.|..:|...::|   :|.|:|       |:....|||:..||.||....||:|:|..||:
Zfish    23 KCPSLLHRRKREAFRSR---HISHRG-------GAGENLENTMAAFKHAVKLGTDMLELDCHLTK 77

  Fly   414 DAQVVVYHDFVLRFML------------------------------------QRMPSFEDLLE-- 440
            |.||||.||..|:...                                    :|:|...|:.|  
Zfish    78 DEQVVVLHDSSLKRSTGINAYVADVAYADLPPYLCKLGVSFKRDCYCEGGEDKRIPLLRDVFEAF 142

  Fly   441 -----------NQDLLIFAYENLNKLML------LAMGGSKRKDLIAVPLEAFSYDQLKEVKVLR 488
                       |.|.||   :.:::|::      |.:.|:...:::                   
Zfish   143 PSTPVNIDIKVNNDTLI---KKVSELVIQYKRQDLTVWGNSSNEIV------------------- 185

  Fly   489 FAGSKGCDKSCDRMLLEQRPFPLLLDL-------------------LDEENLPVDMGFLI-EIKW 533
                |.|.|       |....|:|..|                   :.|:.|.:.|..:: ::|.
Zfish   186 ----KKCHK-------ENPQIPILFSLPRVLLLLGLFYTGLLPFVPIKEQFLEIPMPSIVSKLKD 239

  Fly   534 PQ-MTNMRRW 542
            || .|..:|:
Zfish   240 PQRQTRSQRF 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3942NP_650171.2 CBM20_Prei4 44..164 CDD:99888
GDPD_GDE5 368..684 CDD:176549 51/251 (20%)
gdpd1NP_001004118.1 GDPD_GDE4 12..310 CDD:176553 56/270 (21%)
Blue background indicates that the domain is not in the aligned region.

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