DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3942 and gde1

DIOPT Version :10

Sequence 1:NP_650171.2 Gene:CG3942 / 41489 FlyBaseID:FBgn0038008 Length:739 Species:Drosophila melanogaster
Sequence 2:NP_956537.1 Gene:gde1 / 393213 ZFINID:ZDB-GENE-040426-881 Length:333 Species:Danio rerio


Alignment Length:347 Identity:71/347 - (20%)
Similarity:120/347 - (34%) Gaps:107/347 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   370 IGHKGSGNTYRLGSDVVRENTLYGFKQAVLANADMVEMDVQLTQDAQVVVYHDFVLRFMLQRMPS 434
            :.|:|.|:.       ..|||:...:.|....|..||:|::.|.|...::.||            
Zfish    70 VAHRGGGHD-------APENTIAAIRAASENGATGVELDLEFTADGVPILMHD------------ 115

  Fly   435 FEDLLENQDLLIFAYENLNKLMLLAMGGSKRKDLIAVPLEAFSYDQLKEVKVLRFAGSKGCDKSC 499
                 |..|........||||:.     |:.:.|.|.....||.         ||.|.|      
Zfish   116 -----ETVDRTTNGSGPLNKLLF-----SELRKLDAAAKHRFSD---------RFRGEK------ 155

  Fly   500 DRMLLEQRPFPLLLDLLDEENLPVDMGFLIEIK-WPQMTNMRRWESGSFKPTFDRNFYVDTILEI 563
                     .|.|.:.: ||.:...:....::| .|...      :.:.|..|.:       ..:
Zfish   156 ---------VPTLQEAV-EECIKHQLTIYFDVKGHPDEA------AAALKELFRK-------YPV 197

  Fly   564 VLNKAGKRRIVFCSFDADICAMVRFKQ---NVYPVTLLLEDPHSPVQYADQRVSVQDVAVRFCNS 625
            :.|.:     :.|||:..:  :.|.:|   ||  ||.|...|.|..::.|.       ..||.::
Zfish   198 LYNTS-----IVCSFEPKV--IYRMRQADPNV--VTALTHRPWSLSRFGDG-------TPRFSST 246

  Fly   626 -----LEFLGLTL---HANSLLNKPSTMAYLHQINL---DAFVY----GSSTIDLEIRNKLKKHG 675
                 ::.|.:.|   |.:.|.|.....|:|.|.|.   |...|    |...:...:...::|. 
Zfish   247 WKQHWMQVLDVLLDWAHHHLLWNLCGVSAFLVQKNFISPDYVQYWAARGVEVVGWTVNTAVEKQ- 310

  Fly   676 VLGIIYDRLDQLDQVGEELEGD 697
                .|.:|.:::.:.:.|..|
Zfish   311 ----YYQQLLKINYITDSLVED 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3942NP_650171.2 CBM20_Prei4 44..164 CDD:99888
GDPD_GDE5 368..684 CDD:176549 68/332 (20%)
gde1NP_956537.1 GDPD_GDE1 70..325 CDD:176515 69/342 (20%)
Blue background indicates that the domain is not in the aligned region.

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