DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3916 and Tpsab1

DIOPT Version :10

Sequence 1:NP_650167.1 Gene:CG3916 / 41484 FlyBaseID:FBgn0038003 Length:267 Species:Drosophila melanogaster
Sequence 2:NP_062195.2 Gene:Tpsab1 / 54271 RGDID:3066 Length:310 Species:Rattus norvegicus


Alignment Length:291 Identity:86/291 - (29%)
Similarity:133/291 - (45%) Gaps:48/291 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VLQLFCMLLILRQGLADVVTSTTESPTRINGGQRVN-ETVPFQVSLQMQRRGRWQHFCGGSIVSG 66
            :|:|..:.|.|...|.....|.......|.|||..: ...|:||||::... .|.||||||::..
  Rat    38 MLKLLLLTLPLLSSLVHAAPSLAMPREGIVGGQEASGNKWPWQVSLRVNDT-YWMHFCGGSLIHP 101

  Fly    67 QHVLTAAHCM-------EKMKVEDVSVVVGTLNWKAGGLRHRLVTKHVH----PQYSMNPRII-- 118
            |.|||||||:       .|::|:               ||.:.:..|.|    .|...:|...  
  Rat   102 QWVLTAAHCVGPNKADPNKLRVQ---------------LRKQYLYYHDHLLTVSQIISHPDFYIA 151

  Fly   119 ---NDIALVKVTPPFRLERSDISTI-LIGGSDRIGEKVPVRLTGWGSTSPSTSSATLPDQLQALN 179
               .||||:|:|.|..: .|::.|: |...|:.........:||||:.:...|... |..|:.:.
  Rat   152 QDGADIALLKLTNPVNI-TSNVHTVSLPPASETFPSGTLCWVTGWGNINNDVSLPP-PFPLEEVQ 214

  Fly   180 YRTISNEDCNQK---------GFRVTRNEICALAVQGQGACVGDSGGPLIRPGKQPHL-VGIVSY 234
            ...:.|..|:.|         ...:.|:::.....:|..:|.|||||||:...:...| .|:||:
  Rat   215 VPIVENRLCDLKYHKGLNTGDNVHIVRDDMLCAGNEGHDSCQGDSGGPLVCKVEDTWLQAGVVSW 279

  Fly   235 GSSTCAQ-GRPDVYTRVSSFLPYISQVINQD 264
            |.. ||| .||.:||||:.:|.:|.:.:.:|
  Rat   280 GEG-CAQPNRPGIYTRVTYYLDWIYRYVPKD 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3916NP_650167.1 Tryp_SPc 30..257 CDD:214473 78/255 (31%)
Tpsab1NP_062195.2 Tryp_SPc 66..302 CDD:238113 78/254 (31%)

Return to query results.
Submit another query.