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Protein Alignment Su(var)3-9 and Setmar

DIOPT Version :9

Sequence 1:	NP_524357.2	Gene:	Su(var)3-9 / 41483	FlyBaseID:	FBgn0263755	Length:	635	Species:	Drosophila melanogaster
Sequence 2:	NP_848478.2	Gene:	Setmar / 74729	MGIID:	1921979	Length:	309	Species:	Mus musculus

Alignment Length:	278	Identity:	87/278 - (31%)
Similarity:	116/278 - (41%)	Gaps:	63/278 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly   390 FMYIHDNII--GKDVPKPEAGIVGCKCTEDTEECTASTKCCARFAGELFAYERSTRRLRLRP-GS 451
            |.|..|::.  |.|:...:....||.|.|  ..|...|..|.|....   |:.:   |.||. ||
Mouse    52 FQYTPDHVAGPGADIDPTQITFPGCACIE--TPCVPGTCSCLRHENN---YDDN---LCLRDVGS 108

  Fly   452 ------AIYECNSRCSCDSSCSNRLVQHGRQVPLVLFKTANGSGWGVRAATALRKGEFVCEYIGE 510
                  .::|||..|.|...|.||:||:|....|.:|:|.. .|||:|....:.||.|||||.||
Mouse   109 EGKYAKPVFECNVLCQCGMRCRNRVVQNGLHFLLQVFQTEK-KGWGLRTLEFIPKGRFVCEYAGE 172

  Fly   511 IITSDEANERGKAYDDNGRTYLFDLDYNTAQDSEYTI----------------DAANYGNISHFI 559
            ::...|...|              :...|:.||.|.|                |....|||..|:
Mouse   173 VLGFSEVQRR--------------IHLQTSHDSNYIIAVREHIYSGQIMETFVDPTYIGNIGRFL 223

  Fly   560 NHSCDPNLAVFPCWIEHLNVALPHLVFFTLRPIKAGEELSFDY--------IRADNEDVPYENLS 616
            ||||:|||.:.|..|:.:   :|.|..|..:.|..|||||:||        ...|.|.:.    .
Mouse   224 NHSCEPNLLMIPVRIDSM---VPKLALFAAKDILPGEELSYDYSGRFLNQVSSKDKEKID----C 281

  Fly   617 TAVRVECRCGADNCRKVL 634
            :..|..|.|||.:|...|
Mouse   282 SPPRKPCYCGAQSCTTFL 299

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.