DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-9 and Nsd2

DIOPT Version :10

Sequence 1:NP_524357.2 Gene:Su(var)3-9 / 41483 FlyBaseID:FBgn0263755 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001178481.2 Gene:Nsd2 / 680537 RGDID:1307955 Length:1365 Species:Rattus norvegicus


Alignment Length:324 Identity:86/324 - (26%)
Similarity:125/324 - (38%) Gaps:87/324 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   331 PQKIGERALKSMQIKRAQFVRRKQLADLALFEKRMNHVE-------------KPSPPIRVENN-- 380
            |...|:|..:...::....|.:..|.:.   |.|.|.::             ||.|...::.|  
  Rat   938 PYMEGDRGSRYQGVRGIGRVFKNALQEA---EARFNEIKLQREARETQESERKPPPYKHIKVNKP 999

  Fly   381 ---IDLDTIDSNFMYIHDNIIGKDVPKPEAGIVGCKC-TEDTEECTASTKCCARFAGELFAYERS 441
               :.:.|.|.:           ::||       |.| ..|...|.:.::|..|.          
  Rat  1000 YGKVQIYTADIS-----------EIPK-------CNCKPTDENPCGSDSECLNRM---------- 1036

  Fly   442 TRRLRLRPGSAIYECNSR-CSCDSSCSNRLVQHGRQVPLVLFKTANGSGWGVRAATALRKGEFVC 505
                      .::||:.: |.....|.|:.... ||.|.......:|.|||:.|...:||||||.
  Rat  1037 ----------LMFECHPQVCPAGEYCQNQCFTK-RQYPETKIIKTDGKGWGLVAKRDIRKGEFVN 1090

  Fly   506 EYIGEIITSDEANERGKAYDDNGRTYLFDLDYNTAQDSEYTIDAANYGNISHFINHSCDPNLAVF 570
            ||:||:|..:|...|.|...:|..|:.:.|..    |.:..|||...||.|.|:||||.||....
  Rat  1091 EYVGELIDEEECMARIKYAHENDITHFYMLTI----DKDRIIDAGPKGNYSRFMNHSCQPNCETL 1151

  Fly   571 PCWIEH--LNVALPHLVFFTLRPIKAGEELSFDYIRADNEDVPYENLSTA--VRVECRCGADNC 630
            . |..:  ..|.|     |.:..|.||.||:|:|           ||...  .:..|||||.||
  Rat  1152 K-WTVNGDTRVGL-----FAVCDIPAGTELTFNY-----------NLDCLGNEKTVCRCGASNC 1198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-9NP_524357.2 PTZ00327 11..>80 CDD:240362
Chromo 219..268 CDD:459793
SET_SUV39H 388..634 CDD:380940 72/249 (29%)
Nsd2NP_001178481.2 PWWP_NSD2_rpt1 220..347 CDD:438990
HMG-box_NSD2 452..507 CDD:438807
TNG2 <546..710 CDD:227367
PHD1_NSD1_2 669..711 CDD:277118
PHD_SF 716..762 CDD:473978
PHD3_NSD2 763..816 CDD:277124
PHD_SF 833..873 CDD:473978
PWWP_NSD2_rpt2 879..974 CDD:438993 8/38 (21%)
AWS 1012..1062 CDD:197795 14/77 (18%)
SET_NSD2 1062..1203 CDD:380988 57/158 (36%)
PHD5_NSD2 1241..1283 CDD:277130
C5HCH 1282..1327 CDD:465605
Blue background indicates that the domain is not in the aligned region.

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