DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-9 and suv39h2

DIOPT Version :9

Sequence 1:NP_524357.2 Gene:Su(var)3-9 / 41483 FlyBaseID:FBgn0263755 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001016508.1 Gene:suv39h2 / 549262 XenbaseID:XB-GENE-852675 Length:406 Species:Xenopus tropicalis


Alignment Length:445 Identity:159/445 - (35%)
Similarity:229/445 - (51%) Gaps:87/445 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 NMGVIAKRPPKGEYVVERIECVEMDQYQPVFFVKWLGYHDSENTWESLANVADCAEMEKFVERHQ 270
            |:|:..|.  ...|.||.:....:::....|||||.|:.:|.||||...|:.....:::|   :.
 Frog    32 NIGITRKN--LNNYEVEYLCDYRIEKGVEKFFVKWKGWPESCNTWEPTRNLKCPTLLKQF---YS 91

  Fly   271 QLYEIYIAKITTELEKQLEALPLMENITVAEVDAYEPLNLQIDLILLAQYRAAGSRSQREPQKIG 335
            .||..:.|                                                  .:|.|.|
 Frog    92 DLYNYFCA--------------------------------------------------LKPNKKG 106

  Fly   336 --ERALKSMQIKRAQFVRRKQLADLAL--FEKRMNHVEKPSPPIRVENNIDLDTIDSNFMYIHD- 395
              :.::||:....:.::.:|....:||  :|:.:|..:..|..:.|||.:||:....:|.||:| 
 Frog   107 FLKNSIKSLDPSLSDYIVKKAKQRIALRRWEEELNRKKTHSGTLFVENTVDLEGPPMDFYYINDY 171

  Fly   396 ------NIIGKDVPKPEAGIVGCKCTEDTEECTASTKCCARFAGELFAYERSTRRLRLRPGSAIY 454
                  |.:|:       .||||.|:    :|... |||...||.||||... |::::.||..||
 Frog   172 KASPGVNTLGE-------AIVGCDCS----DCFKG-KCCPTEAGVLFAYNEH-RQIKIPPGRPIY 223

  Fly   455 ECNSRCSCDSSCSNRLVQHGRQVPLVLFKTANGSGWGVRAATALRKGEFVCEYIGEIITSDEANE 519
            ||||||.|...|.||:||.|....|.:|:|.||.||||:....::|..||.||:||:|||:||..
 Frog   224 ECNSRCKCGPDCPNRVVQKGPPYSLCIFRTDNGRGWGVKTLQKIKKNSFVMEYVGEVITSEEAER 288

  Fly   520 RGKAYDDNGRTYLFDLDYNTAQDSEYTIDAANYGNISHFINHSCDPNLAVFPCWIEHLNVALPHL 584
            ||:.||..|.||||||||   :..|:|:|||.|||:|||:||||||||.||..:|::|:|.||.:
 Frog   289 RGQQYDSRGITYLFDLDY---EADEFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDVRLPRI 350

  Fly   585 VFFTLRPIKAGEELSFDYIRADNEDVPYENLSTA-----VRVECRCGADNCRKVL 634
            ..|:.|.|||||||:|||....:.|...:::..:     ||:.|:|||..||..|
 Frog   351 ALFSTRNIKAGEELTFDYQMKGSGDFSTDSIDMSPAKKRVRIACKCGAATCRGYL 405

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-9NP_524357.2 P-loop_NTPase 41..>80 CDD:304359
CHROMO 217..268 CDD:237991 16/50 (32%)
PreSET 362..455 CDD:128744 33/99 (33%)
SET 477..609 CDD:214614 72/131 (55%)
suv39h2NP_001016508.1 CHROMO 43..90 CDD:214605 16/49 (33%)
Pre-SET 152..238 CDD:282838 39/98 (40%)
SET 246..369 CDD:214614 71/125 (57%)
S-adenosyl-L-methionine binding. /evidence=ECO:0000250 257..259 0/1 (0%)