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Protein Alignment Su(var)3-9 and Setmar

DIOPT Version :9

Sequence 1:	NP_524357.2	Gene:	Su(var)3-9 / 41483	FlyBaseID:	FBgn0263755	Length:	635	Species:	Drosophila melanogaster
Sequence 2:	NP_001020219.1	Gene:	Setmar / 500281	RGDID:	1565882	Length:	315	Species:	Rattus norvegicus

Alignment Length:	266	Identity:	87/266 - (32%)
Similarity:	118/266 - (44%)	Gaps:	39/266 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly   390 FMYIHDNIIGK--DVPKPEAGIVGCKCTEDTEECTASTKCCAR----FAGELFAYERSTRRLRLR 448
            |.|..|::.|.  |:...:....||.|.:  ..|...|..|.|    :...|...:..:.....:
  Rat    52 FQYTPDHVAGPGVDMDPTQITFPGCACIK--TPCVPGTCSCLRHESNYNDNLCLRDVGSEAKYAK 114

  Fly   449 PGSAIYECNSRCSCDSSCSNRLVQHGRQVPLVLFKTANGSGWGVRAATALRKGEFVCEYIGEIIT 513
            |   ::|||..|.|...|.||:||.|.|..|.:|:|.. .|||:|....:.||.|||||.||::.
  Rat   115 P---VFECNVLCQCGEHCRNRVVQSGLQFLLQVFQTEK-KGWGLRTLEYIPKGRFVCEYAGEVLG 175

  Fly   514 SDEANER---GKAYDDNGRTYLFDLDYNTAQDSEYTIDAANYGNISHFINHSCDPNLAVFPCWIE 575
            ..|...|   ..|:|.|....|.:..|| .|..|..:|....|||..|:||||:|||.:.|..|:
  Rat   176 FSEVQRRIHLQTAHDPNYIIALREHTYN-GQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRID 239

  Fly   576 HLNVALPHLVFFTLRPIKAGEELSFDY--------IRADNEDV----PYENLSTAVRVECRCGAD 628
            .:   :|.|..|..:.|..|||||:||        ...|.|.:    |        |..|.|||.
  Rat   240 SM---VPKLALFAAKDILPGEELSYDYSGRFLNQISSKDKERIDCGQP--------RKPCYCGAQ 293

  Fly   629 NCRKVL 634
            :|...|
  Rat   294 SCATFL 299

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.