DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-9 and trx

DIOPT Version :9

Sequence 1:NP_524357.2 Gene:Su(var)3-9 / 41483 FlyBaseID:FBgn0263755 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_476769.1 Gene:trx / 41737 FlyBaseID:FBgn0003862 Length:3726 Species:Drosophila melanogaster


Alignment Length:743 Identity:161/743 - (21%)
Similarity:273/743 - (36%) Gaps:205/743 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 NRNL---QKQDLSNLD-----VSKLTPLSP--EVISRQATINIGTIGHVAHGKSTVVKAISGVQT 65
            ||.|   |:|:.:.|.     ||..||..|  :.|..|.|  ..::......|||:...:...: 
  Fly  3069 NRVLPMQQRQEPAPLSNECPVVSSPTPPKPVEQPIIHQMT--SASVSKCYAQKSTLPSPVYEAE- 3130

  Fly    66 VRFKNELERNI----------------TIKLERLSEK------KIKNLLTSKQQRQQYEIKQRSM 108
            ::..:.||..:                :|..|.|.||      |.:.||..:|||:|.   .:.:
  Fly  3131 LKVSSVLESIVPDVTMDAILEEQPVTESIYTEGLYEKNSPGESKTEQLLLQQQQREQL---NQQL 3192

  Fly   109 LRHLAELRRHSRFRRLCTKPASSSMPASTSSVDRRTTRRSTSQTSLSPSNSSGYGSVFGCEEHDV 173
            :.:...|.:|: |:   .:|..:.:   ....|...........||..:.|:       |.:|::
  Fly  3193 VNNGYLLDKHT-FQ---VEPMDTDV---YREEDLEEEEDEDDDFSLKMATSA-------CNDHEM 3243

  Fly   174 --DKIPSLNGFAKLKRRRSSCVGAPTPNSKRSKNNMGVIAKRPPKG-EYVVERIECVEMDQYQPV 235
              .:.|::..  |:.:...:.......:|..:...|.|.|.   .| :.:||.:......|..|.
  Fly  3244 SDSEEPAVKD--KISKILDNLTNDDCADSIATATTMEVDAS---AGYQQMVEDVLATTAAQSAPT 3303

  Fly   236 FFVKWLGYHDSENTWESLANVADCAEMEKFVERH----QQLYEIYIAKITTELEKQLEALPLMEN 296
                    .:.|...|:.|..|....:.:..:.|    :||..    .:..||.::.|     |.
  Fly  3304 --------EEFEGALETAAVEAAATYINEMADAHVLDLKQLQN----GVELELRRRKE-----EQ 3351

  Fly   297 ITVAEVDAYEPLNLQIDLILLAQYRAAGSRSQ--REPQKI-GERALKSMQIKRAQFVRRKQLADL 358
            .||::    |....:..::..|   ||....|  :||:|: |...|..:|.:.....:...:.::
  Fly  3352 RTVSQ----EQEQSKAAIVPTA---AAPEPPQPIQEPKKMTGPHLLYEIQSEDGFTYKSSSITEI 3409

  Fly   359 --ALFE----KRMNHVEKPSP--PIRVENNIDLDTIDSNFM-YIHDNIIGKDVPKPEAGIVGCKC 414
              .:||    .|..|...|.|  |:.....|.:..:.:|.: |:.:.:.|.:           ||
  Fly  3410 WEKVFEAVQVARRAHGLTPLPEGPLADMGGIQMIGLKTNALKYLIEQLPGVE-----------KC 3463

  Fly   415 TEDTEEC-----TASTKCCARFAGELFAYERSTRRLRLRPGSA----------------IYECNS 458
            ::.|.:.     ..||.......|.|.....|. .|.:..|.:                .|:| :
  Fly  3464 SKYTPKYHKRNGNVSTAANGAHGGNLGGSSASA-ALSVSGGDSHGLLDYGSDQDELEENAYDC-A 3526

  Fly   459 RCSCDSSCSNR--------LVQHGRQVPLVLF----------KTANGS----------------- 488
            ||   ...|||        |....|:.|:.:|          :...||                 
  Fly  3527 RC---EPYSNRSEYDMFSWLASRHRKQPIQVFVQPSDNELVPRRGTGSNLPMAMKYRTLKETYKD 3588

  Fly   489 ----------GWGVRAATALRKGEFVCEYIGEIITSDEANERGKAYDDNG-RTYLFDLDYNTAQD 542
                      |.|:.....:..||.|.||.||:|.|...::|.:.||..| ..|:|.:|.|    
  Fly  3589 YVGVFRSHIHGRGLYCTKDIEAGEMVIEYAGELIRSTLTDKRERYYDSRGIGCYMFKIDDN---- 3649

  Fly   543 SEYTIDAANYGNISHFINHSCDPNLAVFPCWIEHLNV-ALPHLVFFTLRPIKAGEELSFDYIRAD 606
              ..:||...||.:.||||.|:||     |:.:.::: ...|::.|.||.|..||||::||    
  Fly  3650 --LVVDATMRGNAARFINHCCEPN-----CYSKVVDILGHKHIIIFALRRIVQGEELTYDY---- 3703

  Fly   607 NEDVPYENLSTAVRVECRCGADNCRKVL 634
              ..|:|:    .::.|.||:..|||.|
  Fly  3704 --KFPFED----EKIPCSCGSKRCRKYL 3725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-9NP_524357.2 P-loop_NTPase 41..>80 CDD:304359 6/54 (11%)
CHROMO 217..268 CDD:237991 9/51 (18%)
PreSET 362..455 CDD:128744 20/120 (17%)
SET 477..609 CDD:214614 46/170 (27%)
trxNP_476769.1 NR_DBD_like 762..>856 CDD:295381
PHD1_KMT2A_like 1268..1344 CDD:276981
PHD 1346..1390 CDD:214584
PHD3_KMT2A_like 1423..1479 CDD:276983
ePHD_KMT2A_like 1737..1841 CDD:277134
FYRN 1891..1935 CDD:283589
FYRC 3388..3476 CDD:197781 16/98 (16%)
SET 3590..3710 CDD:214614 44/140 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467618
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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