DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-9 and Set2

DIOPT Version :9

Sequence 1:NP_524357.2 Gene:Su(var)3-9 / 41483 FlyBaseID:FBgn0263755 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_572888.2 Gene:Set2 / 32301 FlyBaseID:FBgn0030486 Length:2362 Species:Drosophila melanogaster


Alignment Length:698 Identity:171/698 - (24%)
Similarity:258/698 - (36%) Gaps:183/698 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 KAISGVQ--TVRFKNELERNITIKLERLSEKKIKNLLTSKQQRQQYEIK-------QRSMLRHLA 113
            ||:||..  ...||.....|..::|:..::||:|.:.|..:...:.|..       |:..|....
  Fly   909 KAVSGFVECDAMFKAMDLANAQLRLDEKNKKKLKKVPTKVEAPPKVEPPTAVPVPGQKKSLSGKT 973

  Fly   114 ELRRHSRFR-----RLCTKPASSSMPASTSS-------VDRR-TTRRST----------SQTSLS 155
            .|||::.:.     ...:.|:|.|..|:||:       |.:: ..||||          |.:|.:
  Fly   974 SLRRNTVYEDSPNLERNSSPSSDSAQANTSAGKLKPSKVKKKINPRRSTICEAAKDLRSSSSSST 1038

  Fly   156 PSNSSGYGSVFGCEEHDVDK-------IPSLNGFAKLKRRR-SSC------VGAPTPNSKRSKNN 206
            |:......|..........|       ...|:|.:||.:|| :.|      ...|.|.:|| :.:
  Fly  1039 PTREVAASSPVSTSSDSSSKRNGSKRTTSDLDGGSKLDQRRYTICEDRQPETAIPVPLTKR-RFS 1102

  Fly   207 MGVIAKRPP----------------KGEYVVERIECVE----MDQYQP---------VFFVKWLG 242
            |...|...|                :|:..:.|...::    ..|..|         :.....|.
  Fly  1103 MHPKASANPLHDTLLQTAGKKRGRKEGKESLSRQNSLDSSSSASQGAPKKKALKSAEILSAALLE 1167

  Fly   243 YHDSENT--------WESLANVADCAEME---------KFVERHQQLYEIYIAKITTELEKQ--- 287
            ...||:|        |:    |....|:|         ||:|....|  :...|:..:..|:   
  Fly  1168 TESSESTSSGSKMSRWD----VQTSPELEAANPFGDIAKFIEDGVNL--LKRDKVDEDQRKEGQD 1226

  Fly   288 ---LEALP----LMENITVAEVDAYEPL---------NLQIDLILLAQYRAAGS--RSQREPQK- 333
               .||.|    ..:.:...|..|..|.         :......:|.:....|.  ||.|..|| 
  Fly  1227 EVKREADPEEDEFAQRVANMETPATTPTPSPTQSNPEDSASTTTVLKELETGGGVRRSHRIKQKP 1291

  Fly   334 IGERALKS---MQIKRAQFVRRKQLADLALFEKRMNHVEKPSPPIRVENNIDLDTIDSNFMYIHD 395
            .|.||.:.   ..:..|.....:|||:||..|......      :|.|.   |:|    |..:.:
  Fly  1292 QGPRASQGRGVASVALAPISMDEQLAELANIEAINEQF------LRSEG---LNT----FQLLKE 1343

  Fly   396 NIIGKDVPKPEAGIVGCKCTEDTEECTASTKCCARFAGELFAYERSTRRLRLRPG----SAIYEC 456
            |..              :|.....:..|..:|.....|:    |.:...|....|    ..:.||
  Fly  1344 NFY--------------RCARQVSQENAEMQCDCFLTGD----EEAQGHLSCGAGCINRMLMIEC 1390

  Fly   457 NSRCSCDSSCSNRLVQHGRQVPLVLFKTANGSGWGVRAATALRKGEFVCEYIGEIITSDEANERG 521
            ...||..:.|:|:..|..:..|..:|:|.. .|.|:.|...:..|||:.||:||:|.|:|...|.
  Fly  1391 GPLCSNGARCTNKRFQQHQCWPCRVFRTEK-KGCGITAELLIPPGEFIMEYVGEVIDSEEFERRQ 1454

  Fly   522 KAYD-DNGRTYLFDLDYNTAQDSEYTIDAANYGNISHFINHSCDPNLAVFPCWIEHLNVALPHLV 585
            ..|. |..|.|.|     .|...|..|||.:.||||.:|||||||| |....|.  :|..| .:.
  Fly  1455 HLYSKDRNRHYYF-----MALRGEAVIDATSKGNISRYINHSCDPN-AETQKWT--VNGEL-RIG 1510

  Fly   586 FFTLRPIKAGEELSFD--YIRADNEDVPYENLSTAVRVECRCGADNCR 631
            ||:::||:.|||::||  |:|...:         |.|  |.|.|.|||
  Fly  1511 FFSVKPIQPGEEITFDYQYLRYGRD---------AQR--CYCEAANCR 1547

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-9NP_524357.2 P-loop_NTPase 41..>80 CDD:304359 7/23 (30%)
CHROMO 217..268 CDD:237991 14/80 (18%)
PreSET 362..455 CDD:128744 14/96 (15%)
SET 477..609 CDD:214614 54/134 (40%)
Set2NP_572888.2 AWS 1358..1410 CDD:197795 12/55 (22%)
SET 1414..1533 CDD:214614 53/128 (41%)
PostSET 1535..1551 CDD:214703 8/24 (33%)
WW 2014..2043 CDD:278809
SRI 2270..2348 CDD:285448
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467612
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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