DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-9 and Nsd1

DIOPT Version :10

Sequence 1:NP_524357.2 Gene:Su(var)3-9 / 41483 FlyBaseID:FBgn0263755 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001388465.1 Gene:Nsd1 / 306764 RGDID:1307748 Length:2689 Species:Rattus norvegicus


Alignment Length:301 Identity:85/301 - (28%)
Similarity:128/301 - (42%) Gaps:69/301 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   340 KSMQIKRAQFVRRKQLADLALFEKRMNHVEKPSPPIRVENN-----IDLDTIDSNFMYIHDNIIG 399
            |::|...|:|...|...:|...::...:.:||.|...::.|     :.:.|.|.:          
  Rat  1834 KALQEAAARFEELKAQKELRQLQEDRKNDKKPPPYKHIKVNRPIGRVQIFTADLS---------- 1888

  Fly   400 KDVPKPEAGIVGCKCTEDTEECTASTKCCARFAGELFAYERSTRRLRLRPGSAIYECN-SRCSCD 463
             ::|:     ..||.| |...|...::|..|.                    .:|||: :.|...
  Rat  1889 -EIPR-----CNCKAT-DENPCGIDSECINRM--------------------LLYECHPTVCPAG 1926

  Fly   464 SSCSNRLVQHGRQVPLV-LFKTANGSGWGVRAATALRKGEFVCEYIGEIITSDEANERGKAYDDN 527
            ..|.|:.... ||.|.| :|:|.. .|||:|..|.::|||||.||:||:|..:|...|.:...::
  Rat  1927 GRCQNQCFSK-RQYPDVEIFRTLQ-RGWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRYAQEH 1989

  Fly   528 GRT--YLFDLDYNTAQDSEYTIDAANYGNISHFINHSCDPNLAVFPCWIEHLNV-ALPHLVFFTL 589
            ..|  |:..|      |.:..|||...||.:.|:||.|.||     |..:..:| ....:..|.|
  Rat  1990 DITNFYMLTL------DKDRIIDAGPKGNYARFMNHCCQPN-----CETQKWSVNGDTRVGLFAL 2043

  Fly   590 RPIKAGEELSFDYIRADNEDVPYENLSTAVRVECRCGADNC 630
            ..||||.||:|:|        ..|.|.....| |:|||.||
  Rat  2044 SDIKAGTELTFNY--------NLECLGNGKTV-CKCGAPNC 2075

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-9NP_524357.2 PTZ00327 11..>80 CDD:240362
Chromo 219..268 CDD:459793
SET_SUV39H 388..634 CDD:380940 73/248 (29%)
Nsd1NP_001388465.1 PWWP_NSD1_rpt1 318..433 CDD:438989
TNG2 <1452..1585 CDD:227367
PHD1_NSD1_2 1543..1585 CDD:277118
PHD2_NSD1 1590..1636 CDD:277120
PHD3_NSD1 1637..1690 CDD:277123
PHD4_NSD1 1707..1746 CDD:277126
PWWP_NSD1_rpt2 1753..1848 CDD:438992 4/13 (31%)
AWS 1899..1937 CDD:465559 10/58 (17%)
SET_NSD1 1939..2080 CDD:380987 57/158 (36%)
PHD5_NSD1 2118..2160 CDD:277129
C5HCH 2159..2208 CDD:465605
PHA03247 <2221..2593 CDD:223021
Blue background indicates that the domain is not in the aligned region.

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