DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-9 and set-16

DIOPT Version :10

Sequence 1:NP_524357.2 Gene:Su(var)3-9 / 41483 FlyBaseID:FBgn0263755 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_499819.3 Gene:set-16 / 176802 WormBaseID:WBGene00011729 Length:2475 Species:Caenorhabditis elegans


Alignment Length:495 Identity:109/495 - (22%)
Similarity:157/495 - (31%) Gaps:190/495 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 PKGEYVVERIECVEMDQ-YQPVFFVKWLG-----YH--DSENTWESLANVADCAEMEKFVE-RHQ 270
            ||........||:..|: .||:|.||.|.     |.  .:...|:.:        .||..: |.|
 Worm  2091 PKSHRERMMFECIIEDRNNQPIFVVKSLEDPTICYKAVSASKAWQPI--------YEKVHQLREQ 2147

  Fly   271 Q-------------------LYEIYIAKITTEL--------------EKQLEALPLMENITVAEV 302
            |                   |.|..|.|||..|              ...:..|||.||:.... 
 Worm  2148 QQGDSLKFFGSQICGETLFGLNENAITKITESLPGFDTIFTYQHRHQNSPVLELPLAENLMGCA- 2211

  Fly   303 DAYEPLNLQIDLILLAQYRAAGSRSQREPQKIG--------------------------ERALKS 341
             ..||.|           |..|...:.:||.:|                          ..:|:|
 Worm  2212 -RAEPRN-----------RTIGQHFRTKPQPMGGTHHHIGSASGLSSQATIIASSSSSANESLQS 2264

  Fly   342 MQ----IKRAQFVRRKQLADLALFEKRMNHVEKPSPPIRVENNIDLDTIDSNFMYIHDNIIGKDV 402
            .|    :..|...|.:.:        |..:.|:.:...|...                      :
 Worm  2265 RQAATSVTSANSGRTRGV--------RSYYTEEAAARARAFG----------------------I 2299

  Fly   403 PKPEAGIVGCKCTEDTEECTASTKCCARFAGELFAYERSTRRLRLRPGSAIYECNSRCSCDSSCS 467
            | ||...:..:........||.:           ||::..|..:.|    :|...||.       
 Worm  2300 P-PEMASLSLRMETTQNAQTAFS-----------AYQKMRREWKDR----VYLARSRI------- 2341

  Fly   468 NRLVQHGRQVPLVLFKTANGSGWGVRAATALRKGEFVCEYIGEIITSDEANERGKAY-DDNGRTY 531
                                :|.|:.|...:..|:|:.||.||||.|:....|...| ..|...|
 Worm  2342 --------------------AGLGLYAKVDISMGDFIIEYKGEIIRSEVCEVREIRYVAQNRGVY 2386

  Fly   532 LFDLDYNTAQDSEYTIDAANYGNISHFINHSCDPNLAVFPCWIEHLNVAL----PHLVFFTLRPI 592
            :|.:      |.|:.|||...|..:.:||||||||     |..:.|:...    ..::....|||
 Worm  2387 MFRI------DEEWVIDATMAGGPARYINHSCDPN-----CSTQILDAGSGAREKKIIITANRPI 2440

  Fly   593 KAGEELSFDYIRADNEDVPYENLSTAVRVECRCGADNCRK 632
            .|.|||::||        .:|...|..::.|.|||.||.|
 Worm  2441 SANEELTYDY--------QFELEGTTDKIPCLCGAPNCVK 2472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-9NP_524357.2 PTZ00327 11..>80 CDD:240362
Chromo 219..268 CDD:459793 13/57 (23%)
SET_SUV39H 388..634 CDD:380940 63/250 (25%)
set-16NP_499819.3 PHD_SF 42..84 CDD:276966
PHD4_KMT2C_like 427..477 CDD:276987
PHD5_KMT2C_like 479..524 CDD:276988
PHD6_KMT2C_like 554..604 CDD:276989
HMG_KMT2C-like 936..1002 CDD:438813
ePHD2_KMT2C_like 1904..2008 CDD:277136
FYRN 2053..2104 CDD:461787 4/12 (33%)
FYRC 2112..2199 CDD:197781 18/94 (19%)
SET_KMT2C_2D 2319..2474 CDD:380948 59/215 (27%)
Blue background indicates that the domain is not in the aligned region.

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